Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01446 ATGGAAGTGAAAGGAAGGGTAAGCAACTCCCCAAGCACCATAGTCCAAAGTGACGATGAGATGGACCTTCGAAGAGGTCCTTGGACCGTCGATGAAGACCTTGCTCTCATCAATTACATTGCCAATCACGGAGAAGGTCGATGGAATTCCCTTGCACGTTCTGCCGGACTCAAACGAACTGGCAAGAGTTGCAGATTGAGATGGTTGAATTATCTTCGTCCTGATGTTCGTCGTGGCAACATCACTCTTGAAGAACAGCTTCTCATTCTCGAGCTCCATGGTCGCTGGGGAAACCGATGGTCTAAAATTGCCCAATACTTGCCTGGAAGAACTGATAACGAGATCAAGAATTACTGGAGAACTCGTGTTCAAAAGCACGCCAAACAACTCAAATGTGACGTGAATAGCAAGCAATTCAAGGATGCCATGCGCTACCTCTGGATGCCGAGGCTGGTGGAACGCATTCAAGCCGCCGCCGCCGCCACCACCGCTGCGGCCGCCGTCCGTTCTCCCACGGCTTCAGCCAGTGCTACTACAACCATCACCACCAACAACAATATAACATACAACTACAGCAACAACAACAACCTTAACAACAGTTTTGAGGTGCACAGTGGGGAGATGATGTTGAGTCCAGCAATTATGAACAACAACTTCGGTGGTTCACAAAGTTACACTCCAGAGAATAGTAGCACAGGTGCATCATCTGACTCGTTTGGGACTCAGGTTTCACCTGTCTCGGAGTTGGCTCAGGATTACTACAATAATGTCACAGTTAGTAACAGTAACAGTAACAATAACCCTAATCCTGATTACTACCAACAAGCACAAGACCAACTCAGTTTTTTGGATTGCATCACAAGCCCATCGGGGTTGTTCTCTCAGCAGTTGGATTTCCATTCCATGGAACAAAACACCCCATGGATTCAGAGTAACGGGGACGCATCCAACGGTTTCTGGAACGTTGAAAACTTGTTGCTGTTCCAACAACTCACTGACAACATATGA 1008 0.4742 MEVKGRVSNSPSTIVQSDDEMDLRRGPWTVDEDLALINYIANHGEGRWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHGRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDAMRYLWMPRLVERIQAAAAATTAAAAVRSPTASASATTTITTNNNITYNYSNNNNLNNSFEVHSGEMMLSPAIMNNNFGGSQSYTPENSSTGASSDSFGTQVSPVSELAQDYYNNVTVSNSNSNNNPNPDYYQQAQDQLSFLDCITSPSGLFSQQLDFHSMEQNTPWIQSNGDASNGFWNVENLLLFQQLTDNI 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01446 335 CDD SANT 93 121 IPR001005 -
Vimu2g01446 335 ProSiteProfiles Myb-like domain profile. 73 123 IPR001005 -
Vimu2g01446 335 Pfam Myb-like DNA-binding domain 78 121 IPR001005 -
Vimu2g01446 335 Pfam Myb-like DNA-binding domain 25 72 IPR001005 -
Vimu2g01446 335 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 20 203 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vimu2g01446 335 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 76 IPR017930 -
Vimu2g01446 335 FunFam Myb transcription factor 25 77 - -
Vimu2g01446 335 MobiDBLite consensus disorder prediction 221 242 - -
Vimu2g01446 335 SUPERFAMILY Homeodomain-like 22 119 IPR009057 -
Vimu2g01446 335 CDD SANT 27 72 IPR001005 -
Vimu2g01446 335 FunFam MYB transcription factor 82 145 - -
Vimu2g01446 335 Gene3D - 82 145 - -
Vimu2g01446 335 ProSiteProfiles Myb-like domain profile. 20 72 IPR001005 -
Vimu2g01446 335 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 77 127 IPR017930 -
Vimu2g01446 335 SMART sant 24 74 IPR001005 -
Vimu2g01446 335 SMART sant 77 125 IPR001005 -
Vimu2g01446 335 Gene3D - 22 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01446 Vimu-Chr2 9879906 9881615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01446 18 322 MYB Transcription Factor Family AT3G06490 53.106 1.52e-87 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu2g01446 Myb_DNA-binding 4.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01446 K09422 - gmx:100305347 494.197