Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01439 ATGGTCGTAGAAACGGAAATCATCTGCCAGAAGAGCATTCCCATGCTGGACGTGAAGTACCACCTTTGCGTGGCGCAAGAACACGGTGTTAAGGTTGATGTTTCGCCCACCTCCAATGTTGTTCCCATCTTTGGTCACGTGAGGGTTGCGGCTGAATCTGTTTCTACGGAAACGACTCGTTTTGAATCGGCTGTGAGTTTGCCTGAGATGATTGGAGATTCAAGTTTAGAGACTCCTGCTACTAAGTTTACACCAGATGTGCGATCTGGCTGTTGTGCTGATATTGGACCCAGGGGGTCTATGGATGATGAGCACATTCAGATAGATGATCTAGCTGCGCACCTTGGATTCAACTTTGAGCATCCTATGGCAAGTGCGTTTTATGCAGTTTTTGATGGGCATGGAGGGCCAGATGCAGCTGCCTTTGTTAAAAGCAACGCTATGAGATTATTTTTTGAAGATGCTCATATGCTGCAATCATACGATGCTGATTCACTTTTTTTGAAGAGGTTGGAAGATTCTCATCGAAAGGCGTTTTTGGGAGCAGACATTGCCTTGGCTGATGAACGAAGTGTTAGTAGTTCCTGTGGGACAACGGCGCTGACTGCTCTTGTACTCGGGAGGTATTTGATGGTTGCTAATGCTGGGGACTGTAGAGCTGTTCTTTGTAAGCGAGGGGTAGCTGTTGATATGTCCCAAGATCACAGACCGAGTTATTTACCAGAGCGCAGGAGAGTGGAGGAGATGGGTGGATATATTGATGATGGGTATCTCAATGGTCATCTTTCTGTGACTCGTGCTCTTGGGGATTGGGACTTGAAAAATGCCCTTGGTTCTGTGTCGCCTCTTATTGCCGACCCGGATGTTCAGGTGGTCACATTGACAGAGGAGGATGAGTTCTTGATCATTGGTTGTGATGGTATTTGGGATGTACTGTCAAGCCAGGATGCTGTTAGTCTGGTGCGGCGTGGATTAAGAAGGCATGACGATCCTGAACAATGTGCCAGAGAGCTAGTCAAGGAAGCTTTGCGCCTACACTCCTCAGATAATCTTACTGCGATTGTTATCTGCTTGTCCCCTGTCCAAATTGTCGAGTCTTGTCTACCCCAAAGGCGAAGATTCAGATTTTGCTCCCTGTCTGAAGAGGCCCGGAACAGGTTGAGGAGCTTGCTAGAGGGAAACTGA 1185 0.4759 MVVETEIICQKSIPMLDVKYHLCVAQEHGVKVDVSPTSNVVPIFGHVRVAAESVSTETTRFESAVSLPEMIGDSSLETPATKFTPDVRSGCCADIGPRGSMDDEHIQIDDLAAHLGFNFEHPMASAFYAVFDGHGGPDAAAFVKSNAMRLFFEDAHMLQSYDADSLFLKRLEDSHRKAFLGADIALADERSVSSSCGTTALTALVLGRYLMVANAGDCRAVLCKRGVAVDMSQDHRPSYLPERRRVEEMGGYIDDGYLNGHLSVTRALGDWDLKNALGSVSPLIADPDVQVVTLTEEDEFLIIGCDGIWDVLSSQDAVSLVRRGLRRHDDPEQCARELVKEALRLHSSDNLTAIVICLSPVQIVESCLPQRRRFRFCSLSEEARNRLRSLLEGN 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01439 394 FunFam Probable protein phosphatase 2C 22 73 361 - -
Vimu2g01439 394 ProSiteProfiles PPM-type phosphatase domain profile. 88 358 IPR001932 -
Vimu2g01439 394 SUPERFAMILY PP2C-like 83 360 IPR036457 -
Vimu2g01439 394 SMART PP2C_4 78 356 IPR001932 -
Vimu2g01439 394 PANTHER PROTEIN PHOSPHATASE 2C 73 356 IPR015655 GO:0004722|GO:0006470
Vimu2g01439 394 Pfam Protein phosphatase 2C 98 350 IPR001932 -
Vimu2g01439 394 CDD PP2Cc 87 358 IPR001932 -
Vimu2g01439 394 ProSitePatterns PPM-type phosphatase domain signature. 127 135 IPR000222 GO:0043169
Vimu2g01439 394 Gene3D - 74 362 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01439 Vimu-Chr2 9767250 9769083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01439 1 393 PP2C-type Phosphatase Gene Family AT1G48040 57.286 2.33e-146 418
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01439 K14803 - gmx:100798957 671.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01439 2 9767250 9769083 Vimu2g01439 2 9767250 9769083 ECH
Vimu7g01668 7 15490872 15492779 Vimu2g01439 2 9767250 9769083 PCT