Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01431 ATGGCAACCGCGGAGACAGCTCCTGCGGGGCTTGGCCCTAGATATGCACCTGATGACCCTACTCTTCCACAACCGTGGAAGGGATTGATTGATGGCAGCACTGGATTGTTATATTACTGGAATCCTGAAACTAACGTTACACAATATGAAAAACCTGCTCCCGTAACACCACCCTTGCCTGCGCCGGTGACTTCTGCACCGAACTTGGCACCTATACCAGTGGCTCACACCATGCAGATGGGACCGCAGCATGGACAGCAGTTAATGCAAGGCCAACCCTCTCAACAGGTGAGTCACCTTGCCCAACAGCATGGACAATCAATACCACTTCAGCAACAGCAGAGTCCCCATATGCAGAACCACTCTCAGGGTTCTCAGTCTGCGCCGCAGCAGAACTCACTAATGCCGCAGCCAGGCTTACATCAAGCTAGACAGCAAATGATGCAGCCCCAGGGGCAGCAAATGTTGCAGCAGCCTCAAGGACAGCAAATTCAACATCAGATGCCGCCACAGGCAATCCATTCCCAGCATTTTGTGCAAGGAATGCCTCAGGATCATGGCTCGCATATTGTTCCCCCACAAGTACATCAGTTTCCTACCCAAAACATGCACTATATGTCATATCAGCAAAACATTATTACACCCAGGCAACCAAACTCTCAACACATTCAGCCAAACACTGTCTCACCTGGGCAACCTAACCCCCAGCAGGTTCAGCATAACATGCATGGTCAACCCTTCGAAAATCAACAAACAAGCTTTCCAAAAGTAGAGGAAGCGGAGTTTAAAAATGGAAGCCAGGTTGGACTTTCACCATCCCAGTATCCACAGAGGAGTACCTTGCCTGCTCAGAATAATCAGAACCTTCCTCCCGACACAGCTTCTGGTCAAATGCCTAATGTAGGTGTCAATGCTGGTCAGCCACAGCAATTTAGGACTGCCTTATCAGGCAGCGTGCAGAAGTCGCCCTCTGCAATGCCATTGCAGCAGGGTGGATCTGATCTATATTACCAACATGGTCCTAACTTTCATAAGCAGATGAGCCCAGGAATGATGCATGGTCATCCATCCAATGTCCATCCTGCTGGCCAAAAGATGAGTCAGGAGGACAATTTACGTGGCAGAGCAGGAAATGAATATTACTATAATTCTAACAAAGATATGTCCACAATGGGTCGTCGGCAACCAGATATGACTCAAATACCCGTACCAAGAAATCAGCAGGATACGAGGATCGGCAATACTCCTTTTCAAAACGTAATGCCAAGTGGGAATGGAAGTGGTATTGCTGGGAATGCTATGCCTAGCATGTTTGTTCCTCCAATGGGAGGACCTTCACCTCTATCTAATAACTCTTTAATGAGGCCTTCTTATATGGGATCTTCTGATGCAAGTGATCTTTCACCTGCTGAAATTTACTGCCAGCAACATGAAGTTACAGCAACGGGTGGTGACATTCCCCCTCCTTTCATGACATTTGATGCTACTGGGTTCCCTCCAGAGATATTGAGAGAGGTGCGATATCTGCTCCAGAGCAGGAGCATATGTCCCTTTCTTGGGCATCTTCTAAGGGTGGATGGCCCTCCATTCTTCAAATTTCTATGTGACCTGGGATTTGGTAGAGACATAGTAGCAATTGCCAAAACCGGCTCTGGGAAAACATTGGGTTACTTAATTCCTGCCTTCATTCTTCTTAGACAGCGACACAATAATTCTCTGAATGGCCCCACTGTCTTGGTTTTGGCTCCAACACGGGAACTAGCGACACAGATTCATAATGAGGTTATCAAGTTTGGTCGGTCATCACGAGTCTCTTGCACGTGCTTGTATGGTGGAGCACCTAAAGCCCTTCAACTAAAGGAGTTAGATCGGGGAGCAGACATTGTTGTTGCCACACCTGGTCGGCTCAATGATATACTTGAAATGAAGAAAATTGACTTTGGGCAAGTTTCACTACTTGTGCTTGATGAGGCTGACAGAATGCTTGACATGGGTTTTGAGCCTCAAATCCGGAAGATTGTGGATGAGATTCCTGCACGCAGACAAACTCTCATGTACACAGCAACCTGGCCAAAAGAAGTAAGAAAAATTGCTAGTGAACTTCTTGTGAATCCTGTCCAGGTTAACATTGGAAGTGCAGATGAGCTTGCTGCAAATAAAGCCATCACACAGTATGTTGAAGTTGTCCCACAAATGGAGAAGCAGAGGCGTTTGGAACAGATCCTCAGATCCCAAGAACGAGGTTCTAAGGTCATAATATTTTGCTCCACGAAGAGGTTATGTGATCAGCTAGCTCGAAATATTGGCCGCACTTTTGGAGCTGCTGCAATTCATGGAGATAAGTCTCAAGGTGAGAGAGACTGGGTTTTAAGTCAGTTCCGGACTGGGAAGTCACCAATTCTGGTTGCCACTGATGTTGCAGCTCGTGGGCTTGATATTAAGGATATAAGGGTGGTAATAAATTATGATTTCCCCACTGGAATTGAGGACTATGTGCACCGTATAGGAAGAACTGGAAGAGCAGGTGCTACTGGAGTGTCATATACCTTTTTCTCTGAGCAGGACTGGAAACACGCCGGTGATTTAATCAAAGTTTTGGAGGGTGCTAATCAGCATGTGCTTCCAGAGTTAAGACAGATGGCTTTGCGTGGGCCATCAAACTTTGGAAAGGAACGGGGTGGGATGAGTAGGTTTGATTCTGGTGGTGGGCGCTGGGAGACTGGTGGCCGTGGTAGCATAAGAGATGGTGGCTTTGGTGGTCGTGGTGGAATGAGGGATGGTGGCTTTGGTGGTCGTGGGGGTGGCATGAGGGACGGTGGTTTTGGGGGGCGTGGCAGTGGCATGAGGGATGGTGGCTTTGGTGGTCGAGGTGGAGGCATGAGGGATGGAGGATTTGGTGGACGTGGTGGTGGTTTTAGTGGACGTGGTGGCATGAGGGATGGAGCTGGTGGGAGAGGGGTAGGGGATCTGGTGGTCTTCGTGGGGGTCATGGTGGTTGGGGTAGGGGTGAACGTGGTATGGATGACCGTGGACAGGGGCGCGGACGTGGCCGATTTGACAACAGAAGGGATGTTTCTTACAAAAGTAGAGGCAGAAGTTATAGTCGAAGCCCAGAAAGAGTCCGAACATGGGATTATAGTAGTAGTAGCAGAAGTCGTAGTCGAAGCAGGAGTTGGAGCAGAGATCGTAGTAGAAGCCGAAGTCGCAGCTGGTCTCGTGGCCGAAGTTACAGTCGAAGCCGAAGCCGTACCCGCAGCAGGAGCCGGAGCCGGACTTCCTGATCGAAAGGATCTTAGGCCACAGGAAGTGGGAACTTCTGATGCAAGAAATCTTCCCTTGTCTCCTGGTCCTGGCAAACAGGAGAATTCCTCTTTGGGAAATGAGCAAGGGCAGCAGCAATCTGTTGTTGGTAGCTCTGATCCAGGGAATCCAGAAGCCGTGGCAGACCTTGGTCATGAATCAGCTTCTGGTGTTTAG 3477 0.4889 MATAETAPAGLGPRYAPDDPTLPQPWKGLIDGSTGLLYYWNPETNVTQYEKPAPVTPPLPAPVTSAPNLAPIPVAHTMQMGPQHGQQLMQGQPSQQVSHLAQQHGQSIPLQQQQSPHMQNHSQGSQSAPQQNSLMPQPGLHQARQQMMQPQGQQMLQQPQGQQIQHQMPPQAIHSQHFVQGMPQDHGSHIVPPQVHQFPTQNMHYMSYQQNIITPRQPNSQHIQPNTVSPGQPNPQQVQHNMHGQPFENQQTSFPKVEEAEFKNGSQVGLSPSQYPQRSTLPAQNNQNLPPDTASGQMPNVGVNAGQPQQFRTALSGSVQKSPSAMPLQQGGSDLYYQHGPNFHKQMSPGMMHGHPSNVHPAGQKMSQEDNLRGRAGNEYYYNSNKDMSTMGRRQPDMTQIPVPRNQQDTRIGNTPFQNVMPSGNGSGIAGNAMPSMFVPPMGGPSPLSNNSLMRPSYMGSSDASDLSPAEIYCQQHEVTATGGDIPPPFMTFDATGFPPEILREVRYLLQSRSICPFLGHLLRVDGPPFFKFLCDLGFGRDIVAIAKTGSGKTLGYLIPAFILLRQRHNNSLNGPTVLVLAPTRELATQIHNEVIKFGRSSRVSCTCLYGGAPKALQLKELDRGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVDEIPARRQTLMYTATWPKEVRKIASELLVNPVQVNIGSADELAANKAITQYVEVVPQMEKQRRLEQILRSQERGSKVIIFCSTKRLCDQLARNIGRTFGAAAIHGDKSQGERDWVLSQFRTGKSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVSYTFFSEQDWKHAGDLIKVLEGANQHVLPELRQMALRGPSNFGKERGGMSRFDSGGGRWETGGRGSIRDGGFGGRGGMRDGGFGGRGGGMRDGGFGGRGSGMRDGGFGGRGGGMRDGGFGGRGGGFSGRGGMRDGAGGRGVGDLVVFVGVMVVGVGVNVVWMTVDRGADVADLTTEGMFLTKVEAEVIVEAQKESEHGIIVVVAEVVVEAGVGAEIVVEAEVAAGLVAEVTVEAEAVPAAGAGAGLPDRKDLRPQEVGTSDARNLPLSPGPGKQENSSLGNEQGQQQSVVGSSDPGNPEAVADLGHESASGV 1158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01431 1158 MobiDBLite consensus disorder prediction 1116 1140 - -
Vimu2g01431 1158 Pfam Helicase conserved C-terminal domain 734 842 IPR001650 -
Vimu2g01431 1158 MobiDBLite consensus disorder prediction 263 305 - -
Vimu2g01431 1158 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 574 857 IPR027417 -
Vimu2g01431 1158 CDD SF2_C_DEAD 722 851 - -
Vimu2g01431 1158 MobiDBLite consensus disorder prediction 1 24 - -
Vimu2g01431 1158 SUPERFAMILY WW domain 15 53 IPR036020 GO:0005515
Vimu2g01431 1158 FunFam ATP-dependent RNA helicase RhlB 712 884 - -
Vimu2g01431 1158 ProSiteProfiles WW/rsp5/WWP domain profile. 20 54 IPR001202 GO:0005515
Vimu2g01431 1158 Pfam WW domain 22 52 IPR001202 GO:0005515
Vimu2g01431 1158 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 654 662 IPR000629 -
Vimu2g01431 1158 SMART ultradead3 503 725 IPR014001 -
Vimu2g01431 1158 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 737 881 IPR001650 -
Vimu2g01431 1158 MobiDBLite consensus disorder prediction 217 249 - -
Vimu2g01431 1158 Pfam DEAD/DEAH box helicase 540 697 IPR011545 GO:0003676|GO:0005524
Vimu2g01431 1158 CDD DEADc 540 708 - -
Vimu2g01431 1158 MobiDBLite consensus disorder prediction 884 972 - -
Vimu2g01431 1158 MobiDBLite consensus disorder prediction 81 171 - -
Vimu2g01431 1158 Gene3D - 712 883 IPR027417 -
Vimu2g01431 1158 MobiDBLite consensus disorder prediction 266 305 - -
Vimu2g01431 1158 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 534 708 IPR014001 -
Vimu2g01431 1158 SMART ww_5 21 54 IPR001202 GO:0005515
Vimu2g01431 1158 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 463 881 - -
Vimu2g01431 1158 CDD WW 23 54 IPR001202 GO:0005515
Vimu2g01431 1158 Gene3D - 467 711 IPR027417 -
Vimu2g01431 1158 ProSitePatterns WW/rsp5/WWP domain signature. 26 52 IPR001202 GO:0005515
Vimu2g01431 1158 SMART helicmild6 758 842 IPR001650 -
Vimu2g01431 1158 MobiDBLite consensus disorder prediction 1087 1158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01431 Vimu-Chr2 9708108 9714770 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01431 489 880 Eukaryotic Initiation Factors Gene Family AT3G19760 31.000 2.66e-56 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01431 K12823 - gmx:100807830 1420.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01431 2 9708108 9714770 Vimu2g01431 2 9708108 9714770 ECH