Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01430 ATGAGCATGGAAGCTGATGCTGCTACCACTTCACAGTTACCATTAGCCGACACAGACATAAACTGGGACAGGTTGGACAAAACCAAGTTCCACGTCATCGGTGCCGTTCTCTTCACGGCTCAATCAGGCCTGCTTCATCCAACGGCGGTGGTGAAGACACGAATGCAAGTGGCGGGGTCGGAGTCCTGGCACGTGCGAGGAGGAACGTCGGTGCTGGCCCAAATTCTGCGGAGCGATGGCGTTTCGGGAATCTTCAGAGGCTTCGGCACTTCCGCCATTGGTTCAATTCCCGGTAGGGTTCTGGCGCTCACCTCTCTCGAGGTCTCCAAAGACATTATCCTGAAACACACGCAAGCCACTCGCATTCCAGAAGCTTCTCGTGTTGGCCTCGCTAACGCAATCGCGGGCATGATCTCTAACTTGATTTGTCAGAGGTTGATGGTGCAGGGTCTTCCTGGGACAGCGTTCTGTAGAGGGCCGTTTGATGTTGTTCGGAAAGTTGTGGAGAATGAGGGGTTTCGTGGTCTGTATAGGGGTTTTGGATTAACGGCGATTACGCAGTCCCCTGCTTCTGCACTTTGGTGGGGTTCATATGCTGCCGCACAACACCTAATTTGGAGAAGTTTGGGCTACAAAGATGATACGGGTAAAAAACCTTCACATGTGGAAATGGTTACAGTTCAGGCTAGTGCTGGGATGGTGGCTGGTGCTTGTTCATCTGTTATCACTACTCCCATAGATACTGTGAAAACACGTCTTCAGGTGATGGACAACTATGGCTCTGAAAGACCATCAGTACTGAAGACAGCAAAGATTCTCCTCAAGGAAGATGGATGGTGGGGATTTTACAGGGGCTTTGGACCAAGATTTTTGAACATGTCACTTTATGGAACAAGCATGATTGTTACTTATGAACTGATAAGTATGCCACCTCTTGCTTATTTATTTTGGCACCAATACTTTCTTTTATAG 972 0.4907 MSMEADAATTSQLPLADTDINWDRLDKTKFHVIGAVLFTAQSGLLHPTAVVKTRMQVAGSESWHVRGGTSVLAQILRSDGVSGIFRGFGTSAIGSIPGRVLALTSLEVSKDIILKHTQATRIPEASRVGLANAIAGMISNLICQRLMVQGLPGTAFCRGPFDVVRKVVENEGFRGLYRGFGLTAITQSPASALWWGSYAAAQHLIWRSLGYKDDTGKKPSHVEMVTVQASAGMVAGACSSVITTPIDTVKTRLQVMDNYGSERPSVLKTAKILLKEDGWWGFYRGFGPRFLNMSLYGTSMIVTYELISMPPLAYLFWHQYFLL 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01430 323 ProSiteProfiles Solute carrier (Solcar) repeat profile. 26 112 IPR018108 -
Vimu2g01430 323 ProSiteProfiles Solute carrier (Solcar) repeat profile. 123 204 IPR018108 -
Vimu2g01430 323 Gene3D Mitochondrial carrier domain 148 311 IPR023395 -
Vimu2g01430 323 ProSiteProfiles Solute carrier (Solcar) repeat profile. 223 310 IPR018108 -
Vimu2g01430 323 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 9 308 - -
Vimu2g01430 323 Gene3D Mitochondrial carrier domain 22 147 IPR023395 -
Vimu2g01430 323 Pfam Mitochondrial carrier protein 142 206 IPR018108 -
Vimu2g01430 323 Pfam Mitochondrial carrier protein 35 116 IPR018108 -
Vimu2g01430 323 Pfam Mitochondrial carrier protein 227 307 IPR018108 -
Vimu2g01430 323 SUPERFAMILY Mitochondrial carrier 23 306 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01430 Vimu-Chr2 9698351 9700349 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01430 17 307 Chloroplast and Mitochondria Gene Families AT5G15640 48.355 2.30e-92 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01430 K15121 - gmx:112997745 518.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01430 2 9698351 9700349 Vimu2g01430 2 9698351 9700349 ECH