Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01421 TTGCAGTACGAGAAGGTGGAGAAGATAGGGGAGGGAACATACGGCGTCGTATACAAGGCTCGCGACCGCGTCACCAATGAGACCATCGCTCTTAAGAAGATTCGCCTCGAGCAGGAAGACGAGGGAGTTCCCAGCACTGCCATTCGTGAGATTTCGCTCCTCAAAGAGATGCAGCATAGGAACATTGTTAGGTTGCAGGATGTAGTGCACAGCGAGAAGCGATTGTATCTGGTTTTCGAGTATCTGGACTTGGATCTAAAGAAACACATGGATTCATCTCCAGAGTTTGTGAAAGATCCACGGCAAGTAAAAATGTTCCTCTATCAAATTCTCTGTGGCATTGCTTACTGCCATTCGCACAGAGTTCTTCATCGAGACTTGAAACCACAGAATTTGTTGATAGATCGTCGTACAAATTCCTTAAAACTTGCAGATTTTGGATTGGCTAGGGCATTTGGCATTCCTGTCAGGACATTTACTCATGAGGTGGTGACATTATGGTACAGAGCTCCAGAAATATTGCTTGGGTCTCGTCATTATTCTACCCCAGTTGATGTTTGGTCAGTGGGATGTATATTTGCAGAGATGGTAAACCGACGACCTCTATTTCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGATATCGGCTGGTGTTTTTTCTCAACATTTTCCTCTGTCTTGGCCTGGACAGCCTCAGCAACCTCACCGCAATCCCATTTGCTTCTATTGCACCTTTTATAGATAAGGGGTTTGAGTCAATGTTTTGGATAGCTGTGCATAGCGACCCACTCCCAAAAAGCTGA 813 0.4477 MQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHRNIVRLQDVVHSEKRLYLVFEYLDLDLKKHMDSSPEFVKDPRQVKMFLYQILCGIAYCHSHRVLHRDLKPQNLLIDRRTNSLKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNRRPLFPGDSEIDELFKIFRYRLVFFLNIFLCLGLDSLSNLTAIPFASIAPFIDKGFESMFWIAVHSDPLPKS 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01421 270 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Vimu2g01421 270 Pfam Protein kinase domain 3 214 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g01421 270 SUPERFAMILY Protein kinase-like (PK-like) 2 218 IPR011009 -
Vimu2g01421 270 SMART serkin_6 3 250 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g01421 270 FunFam Cell division control protein 2 1 83 - -
Vimu2g01421 270 ProSiteProfiles Protein kinase domain profile. 3 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g01421 270 Gene3D Transferase(Phosphotransferase) domain 1 85 225 - -
Vimu2g01421 270 PANTHER CELL DIVISION PROTEIN KINASE 2 231 - -
Vimu2g01421 270 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Vimu2g01421 270 FunFam Mitogen-activated protein kinase 82 247 - -
Vimu2g01421 270 ProSitePatterns Serine/Threonine protein kinases active-site signature. 122 134 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01421 Vimu-Chr2 9641372 9650180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01421 2 217 Core Cell Cycle Gene Families AT3G48750 90.741 8.57e-147 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Vimu2g01421 Pkinase 9.8e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01421 K02206 - gmx:100782865 437.958