Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01420 ATGTGCAGCTTCATCTTTGGGCCAATAATCATGGACAATTACCAAGGTGATTTAACTGACATAGTCCGAGCAAGTGGTGGAGCATATGGTGGTGGTGGTGGTGGTGGCAGCAGCAGCTGCAGCACAGGCACTTCATCTGCTGAATTACCTACCACATCTCATCACCATACTACTATTACTCACACCCTCTCTCGTAATGATCACTGGCACCAACACTTCTCTTCTTCTTCTTCTTCTTCTGATCCCATCACCTTCTCTTCTGTGCTTCAAGACCCCAGAGGACTCACCAACTTTGGTGATCCCTTCTCCACCATGAGAGATCCCTTCCTTCAGGAGCTTGACATGCCTTCCGCTTCTTCCTACTTCACTGGGGGCTTGGAAGAAGCAGCTGCGAGTTTTGGTGCTTCTGCTGTTAGTACTAGTACTAATACTAATACTAGCACCACTGTTTTTGCTGCACACAAGATTCTTGAGGAGCATGACATGAGAAGACCTTGTAAAAACATATTCTCCAACATGATTCAGATCTCTCCCAATGCAAAGTTACCGGTTTCACCCTATGATTCCACCACAGCGGTGGCACCTTCTCCAAGGGCAATTAAACCTCCTGCTGTTGTTTCACCCAACATGGTTAATGCAAACTCCTCCAAGGATTGCCTTGTGGACACCACAGGAGTGCAGATCTCGTCTCCACGGAATCCGGGTCTTAAACGAAGGTGCGGTGGGGTGAAATTTTATGAAAGTAGCTATGCTGAAGTTTGCACTGTAGAGAGAAAGAAGAACCAGGCCAAAAAGGTGGTTTGTATTCCTGCACCAGCAGCTGCAAACAGCAGACAAACTGGAGAGGTTGTTCCGTCAGATTTGTGGGCTTGGAGAAAATATGGTCAGAAACCCATTAAAGGTTCACCTTATCCCAGGGGTTACTACAGATGCAGCAGCTCAAAGGGTTGCTCTGCGAGGAAGCAAGTTGAGCGGAGCAGAACAGACCCAAACATGTTGGTTATTACATACACATCAGAGCACAACCATCCATGGCCAACTCAAAGAAATGCTCTGGCCGGTTCGACCAGGTCACAGCCATCCAAGAACAATGCTGGAAATTCAAAGAGCTTAGAAGGGTCAAACCCCCAAAAGAGCACAACATCAAAAGCAAAGGATGAGCAGCAGCAACAGCAGCAGGAGAGCAACAACAGTGAGGGCAATGTGTCCCCAGTTGTTGCTGGGAACTCATCAGCGAACAGTGCATCTGTGAAGGAAGAGAATATGGAGGACATAGAGAAGCAGTTTGAGATGGATGAGGGAGAGTTCAGTGATGGACTCCCTTACAAGCCTTGTTTGATGGATCAGAGTAATAATCAATCTGAGGACTTCTTTGCTGAGTTGGGAGAAATAGAAGCTGACCCGCTGGATATTCTGTTTACCCAAGGTTTTGGTGCGGCTGATGATCAAAGGGAAGAATCCAAGGCCTTGGATCCATTTCATCTGTTTGACTGGTCAGGAGACAACAACACCAGCACAAACAGCAGTTCATTTGAAGAGCCTAATGCAAAGAGAAGGTTATAA 1563 0.469 MCSFIFGPIIMDNYQGDLTDIVRASGGAYGGGGGGGSSSCSTGTSSAELPTTSHHHTTITHTLSRNDHWHQHFSSSSSSSDPITFSSVLQDPRGLTNFGDPFSTMRDPFLQELDMPSASSYFTGGLEEAAASFGASAVSTSTNTNTSTTVFAAHKILEEHDMRRPCKNIFSNMIQISPNAKLPVSPYDSTTAVAPSPRAIKPPAVVSPNMVNANSSKDCLVDTTGVQISSPRNPGLKRRCGGVKFYESSYAEVCTVERKKNQAKKVVCIPAPAAANSRQTGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWPTQRNALAGSTRSQPSKNNAGNSKSLEGSNPQKSTTSKAKDEQQQQQQESNNSEGNVSPVVAGNSSANSASVKEENMEDIEKQFEMDEGEFSDGLPYKPCLMDQSNNQSEDFFAELGEIEADPLDILFTQGFGAADDQREESKALDPFHLFDWSGDNNTSTNSSSFEEPNAKRRL 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01420 520 MobiDBLite consensus disorder prediction 498 513 - -
Vimu2g01420 520 Gene3D WRKY domain 259 339 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu2g01420 520 MobiDBLite consensus disorder prediction 337 418 - -
Vimu2g01420 520 MobiDBLite consensus disorder prediction 497 520 - -
Vimu2g01420 520 SUPERFAMILY WRKY DNA-binding domain 283 346 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu2g01420 520 ProSiteProfiles WRKY domain profile. 280 346 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu2g01420 520 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 17 472 IPR044810 GO:0003700
Vimu2g01420 520 MobiDBLite consensus disorder prediction 30 58 - -
Vimu2g01420 520 MobiDBLite consensus disorder prediction 337 422 - -
Vimu2g01420 520 MobiDBLite consensus disorder prediction 35 58 - -
Vimu2g01420 520 FunFam probable WRKY transcription factor 14 259 339 - -
Vimu2g01420 520 Pfam WRKY DNA -binding domain 287 344 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu2g01420 520 SMART WRKY_cls 285 345 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01420 Vimu-Chr2 9629721 9632517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01420 1 503 WRKY Transcription Factor Family AT1G30650 40.619 4.94e-90 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu2g01420 WRKY 3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01420 - - aprc:113852911 751.895