Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01412 ATACAACTGTTGAATGCACAAGTTGGGTCTCTGTTGCTGTTAGGGCATTTGGCGAGGGATGCAATCGAAACTGGGGACCTTAGATCACCAATTTCTCATCTTTCCAATCTCCATCAAATCGTTTCCTCCCTATTCCAATTAAGAGCTAAAGTCGATGCTTATGTGGTTTACATTTGCTTGCCAGCTGAGAGTGCTTCTGATAAACTCGTGATGGGCGCTCCGAAGCAGAAATGGACTGCAGAAGAGGAAGCAGCACTCAAAGCTGGAGTTATCAAGCATGGTGTTGGTAAATGGCGCACCATACTGAAGGATCCAGAGTTTAATAATGTTTTATACCTGCGGTCAAATGTGGATCTCAAGGATAAATGGCGAAATCTGAGCGTGATGGCAAATGGATGGAGCTCTAGGGAGAAGTCTAGGCTAGCGGTCAGAAGGGTGCATCATACCCCAAAACAGGATGAGCACTCCATGTCTATCACTCCTGTTGCTCCTAGTGATGAAGACATTGTTGATGTTAAGCCTCTTCAAATTTCTAGAGATACAGTGCATATTCTGGGTCCGAAAAGATCTAATTTAAGTTTGGATAAACTTATAATGGAAGCAATCACTAGCTTGAAGGAGAATGGTGGTTCTAATAAGACAGCTATTGCTGCTTTCATAGAGGACCAATATTGGGCGCTGCCAGACTTAAAAAGGATGTTGTCTGCAAAATTAAAGTTTTTGACAGCAAGTGGAAAACTGATCAAGGCTCTCTCTTCTGTAGTCTGCCTGGCTCTTGGGAACGGGCTTTTCTCTAAATTGGTGGTAAACCGCAAGTATAGGATTGCACCTACAGCAGCATATTCTGACAGAAGAAGAAACTCGTCCATGTTATTTTTGGATGGGAGGCAAAAAGCCTCCATGAAAATGGACAAGGATGAGACCAACATTCTTACTAAATCTCAGATAGATTTAGAGTTAGCGAAGATAAGGTCCATGACTCCGCAAGAGGCAGCTGCGTTTGCTGCTCGAGCAGTTGCAGAAGCAGAAGCTGCCATAGCAGAAGCAGAGGAGGCAGCCAAGGAGGCTGAAGCAGCAGAAGCCGATGCAGAGGCGGCACAAGCTTTTGCAGATGCTACAACAAAATCAGGGAAAGGAAGGAAATCCCCAAGGAGGGTAAAATCTCTTCCTTCTCCATCTTTTCTCATTCATGATACTAAAATACGTCTGTAG 1212 0.4422 IQLLNAQVGSLLLLGHLARDAIETGDLRSPISHLSNLHQIVSSLFQLRAKVDAYVVYICLPAESASDKLVMGAPKQKWTAEEEAALKAGVIKHGVGKWRTILKDPEFNNVLYLRSNVDLKDKWRNLSVMANGWSSREKSRLAVRRVHHTPKQDEHSMSITPVAPSDEDIVDVKPLQISRDTVHILGPKRSNLSLDKLIMEAITSLKENGGSNKTAIAAFIEDQYWALPDLKRMLSAKLKFLTASGKLIKALSSVVCLALGNGLFSKLVVNRKYRIAPTAAYSDRRRNSSMLFLDGRQKASMKMDKDETNILTKSQIDLELAKIRSMTPQEAAAFAARAVAEAEAAIAEAEEAAKEAEAAEADAEAAQAFADATTKSGKGRKSPRRVKSLPSPSFLIHDTKIRL 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01412 403 SUPERFAMILY "Winged helix" DNA-binding domain 188 250 IPR036390 -
Vimu2g01412 403 SMART h15plus2 188 253 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vimu2g01412 403 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 103 IPR017930 -
Vimu2g01412 403 ProSiteProfiles Myb-like domain profile. 75 127 IPR001005 -
Vimu2g01412 403 FunFam Telomere repeat-binding factor 1 72 128 - -
Vimu2g01412 403 SUPERFAMILY Homeodomain-like 72 141 IPR009057 -
Vimu2g01412 403 Gene3D - 187 267 IPR036388 -
Vimu2g01412 403 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 190 277 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vimu2g01412 403 Coils Coil 332 369 - -
Vimu2g01412 403 SMART sant 74 129 IPR001005 -
Vimu2g01412 403 CDD SANT_TRF 76 126 - -
Vimu2g01412 403 PANTHER SINGLE MYB HISTONE 4 71 380 IPR044597 GO:0003691
Vimu2g01412 403 Pfam Myb-like DNA-binding domain 75 126 IPR001005 -
Vimu2g01412 403 Gene3D - 71 129 - -
Vimu2g01412 403 MobiDBLite consensus disorder prediction 353 393 - -
Vimu2g01412 403 Pfam linker histone H1 and H5 family 193 249 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01412 Vimu-Chr2 9566994 9571386 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01412 71 326 Single Myb Histone (SMH) Gene Family AT1G49950 57.088 7.93e-93 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu2g01412 Linker_histone 5.3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01412 K09422 - gmx:100780698 450.669