Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01394 ATGGCTAGAAGGAAGCTTTTAAGATTGGGAGAGGTTGCAAGGAAGAGAGTGATAGAGAAACGTAAACAGAAGTTCTTCAAAAAGAATGGCGGTTTGTTGTTGCAACAAAGAATGTCATCTAATGAAGCTAATGTAAACAAAGCTATTCTCTTTAGCTTAGATGATTTAGAGAAAGCTACTGACAACTTTAACATGGATAGAGTTCTGGGAAAGGGAGGACAAGGTACGGTTTACAAAGGAATGCTAGTAGATGGTAGAATTGTTGCAGTGAAAAAATTTAAGGTGGAAGGAAATATTGAAGAGTTCATCAATGAGTTTGTCATTCTCTCACAAATCAACAACAGAAATGTGGTCAAATTGTTAGGATGTTGTTTGGAGACAGAAATTCCCTTACTTGTTTATGAATTCATTCCTAATGGTAATCTCTTTGAATATTTGCATGACCAGACAAAGGAGTTATTACCTATGACATGGGAGATGTGTTTGAGAATTGCCACTGAGATCGCAGGAGCTCTCTTTTACCTGCACTCGGTTGCATCTAAACCCATTTATCATAGAGATATCAAATCCACAAATATACTATTGGATGACATGTATAGGGCAAAAATCGCAGATTTTGGAACATCCCGGGTAATTTCTATTGAAGCTACTCATCTTACAACAGTTGTTCAAGGTACCTTCGGTTATTTGGATCCTGAATATTTTCACACTAGTCAATTTACAGAGAAAAGTGATGTCTATAGCTTTGGAGTAGTTCTTGCTGAACTTTTAACAGGCCAAAAGCCAATATCACCAGCAAGACCTGGAGAGTGCAAGAGTCTAGCATCATATTTTGTTGAGTGTCTGGAGGAGGACAATCTGTTTGACATTATTGACAAAAGAGTTACGAAAGAAGCTGAGAAGGGACAAATCATTGCCGTTGCTAATCTTGCAAATAGATGCTTAGAGTTGAATGGAAAGAAACGTCCAACTATGAAAGAGATCACACTTGAATTAGAAGGGATTCATGGATTGGTTAGGAAGTGTAATGCAGAGAAAAAAGGTGACGAAGTTGAGCTTGCAGGAGTTGGCATCCTAGGGATGGATATTCTACGTCAAAGTCATGAAAACTCATCGATGCTTGTTCATGTTCTTCTCCAAGAAGGGAGCTATAAGTACTCAGCTACAGCATTCCATCTCATTTTCAAATAG 1191 0.3804 MARRKLLRLGEVARKRVIEKRKQKFFKKNGGLLLQQRMSSNEANVNKAILFSLDDLEKATDNFNMDRVLGKGGQGTVYKGMLVDGRIVAVKKFKVEGNIEEFINEFVILSQINNRNVVKLLGCCLETEIPLLVYEFIPNGNLFEYLHDQTKELLPMTWEMCLRIATEIAGALFYLHSVASKPIYHRDIKSTNILLDDMYRAKIADFGTSRVISIEATHLTTVVQGTFGYLDPEYFHTSQFTEKSDVYSFGVVLAELLTGQKPISPARPGECKSLASYFVECLEEDNLFDIIDKRVTKEAEKGQIIAVANLANRCLELNGKKRPTMKEITLELEGIHGLVRKCNAEKKGDEVELAGVGILGMDILRQSHENSSMLVHVLLQEGSYKYSATAFHLIFK 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01394 396 SMART serkin_6 63 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g01394 396 Pfam Protein tyrosine and serine/threonine kinase 64 331 IPR001245 GO:0004672|GO:0006468
Vimu2g01394 396 FunFam Wall-associated receptor kinase 2 33 136 - -
Vimu2g01394 396 ProSitePatterns Serine/Threonine protein kinases active-site signature. 183 195 IPR008271 GO:0004672|GO:0006468
Vimu2g01394 396 Gene3D Phosphorylase Kinase; domain 1 27 136 - -
Vimu2g01394 396 SUPERFAMILY Protein kinase-like (PK-like) 42 332 IPR011009 -
Vimu2g01394 396 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 15 340 IPR045274 GO:0007166
Vimu2g01394 396 ProSiteProfiles Protein kinase domain profile. 63 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g01394 396 FunFam Wall-associated receptor kinase 2 137 354 - -
Vimu2g01394 396 Gene3D Transferase(Phosphotransferase) domain 1 137 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01394 Vimu-Chr2 9441626 9444034 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01394 21 335 Receptor kinase-like Gene Family AT1G69730 64.353 6.50e-145 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vimu2g01394 PK_Tyr_Ser-Thr 9.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01394 - - gmx:100798794 584.719