Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01378 ATGGATTCTTCAATGGCAAGTGCTGGTGGTTCTGCTGATGAAGCTTCTCAAAACCATAACAATGGAAGGAAAACCTCCTACAAACGTCTCTCTTCTTCTCAAACATCAAGACTTGAAAGGTTCATCAAGGATTGCCCACACCCTGATGAGGCGCAACGACGTCAATTGGCTGCTGAGATTGGACTTGAGCCAAGGCAAATAAAGTTTTGGTTTCAGAATAAGAGGACTCAGATCAAGAATCAACACGAGAGAGCAGATAACACTGCTCTTCGAGTTGAGAATGATAGGATACACACAGAAAATGTTACAATGCAAGAGGCCTTGAAGAGTATGCTTTGCCCATCTTGTGGGGGACCACCGTGTCTTGAAGGAGATCGTGAACATGCTATCCATAATATGAGACTTGAAAATATGCACCTAAAGGAAGAGCATGAGAAGGTGTCTCGTCTTCTTTCGAGGTACTTGGAGAGCCAGATGTTACCACCTGATCAGTTCCAGCAGGGTTTTTTTCCCATCATAGGATCAAGTTCAAATGCTGCAGCACTTGGAAATCCACTGAACCAAGTGATCGGTGGAAGTTCAAGTCATGATCCAAATCTTGCTTTGCATATGATGGATGGTGGCCATAACTTTCTTGCGAGTGAAGGCATAGAAAAAAACCTTATGGCTAAGGTTGCTGCTACTGCAATGGATGAGCTAGTTAGGCTTGTTCGGATTAATGAGCCCTTTTGGATTAAGTCCTCATCTCCAGATGGCAAGTTCTGTCTACTGCTTGAAAACTATCAAAAAATGTTCCCAAAGACCAAACATTTCAAAGGGCCAAACGTTCGTATTGAAGCAACAAAAGAATCAGGAATAGTGAGCATTAATAGCCTTCAGCTTGTTGACATGTTTCTTGATTCGGACAAATGGGTGAATTTGTTCCCAACAATGGTCTCAAAAGCAGAAACGGTGAAAGTAATCGAAAGAGGTTTGCCAGGAAACCGAAGTGGAGCCTTGCAGCTGATGGTCCAGCAAATGCATGTTCTTTCACCCTTTGTGCAACCTCGTGAATTTCAGTTCCTTCGTTTCTGTCAACAAATTGAAGAAGGCCTGGTGATAGCAGATGTATCATTTGATTCCTTCCAGCAAAAACCCTCTATTTTTCAGTGTTGGAAACATCCCTCTGGATGCTTGATCCAGGAAATGCCCAATGGGTGCTGCATGGTTACTTGGGTTGAGCACGTGGAAGTGGATGATAAAATCCAAATACATCCGCTGTACAAAGATATTATTGTTAAGGGCGTTGCATACGGAGCTGAAAGGTGGATTATGGAACTTCAAAGAATCTGCGAGAGATTTGCTGCCTTTTATCTTGAAAAGATACCTGATCATGATGCTGCAGGAGTGATCAATTCTCTTGAGGGAAGGCGAAGTATAATGAATTTTTCTCATCGTATGCTTAAAATCTTCTGTGAAAGTATAACCATGGCAGATGGCTTGGACTTTCCGCTTTGCGATGTGGTGAACACTAGTGGGGTGAGAGTCTCTATTCGCGAAAGCAAAATCAATGGACAGCCAAGTGGCATGATTGTTGCAGCTGCTACCTCCATTTGGCTTCCCGTCCATTATATGAAAGTTTTTGAGTTCTTCCTAGATGATAAAAACCGTGCTCAGTGGGATGTTCTTACCTGTGGAAATCAGGCACACGAGGTGGCACACATCTCAAATGGAATTCACCCTGGGAACTGTGTATCTGTTATTCGGCCATTCATCCCTAGCGAGAACAATGCACTGATTCTTCAAGAGAGTTTCACAACCCCGATGGGATCGTATGTTATATATGCGCCAACTGATGTAGCAACTATGACTGCGGCCATAATGGGAGAAAACTCTTCAATGTTACCAGTTCTTCCATCAGGTTTTGTGATCTGCCCAGATGGTGAAACAAATTCAGCTATGGGAGCATTTGATGGTGCAGATACTGAAAGATTGGGAGGCTCGTTGCTGACTGTGGCATTTCAAATACTAGCTAGTGCTGATGGACGCAATATGCCAAATAGGAAAGCCGGAGCAGCTGTCAACTCTCTTTTAACCTCAACTATTCTCAGAGTCAGGGATGCTCTCAACTGCAACAACTAG 2121 0.4342 MDSSMASAGGSADEASQNHNNGRKTSYKRLSSSQTSRLERFIKDCPHPDEAQRRQLAAEIGLEPRQIKFWFQNKRTQIKNQHERADNTALRVENDRIHTENVTMQEALKSMLCPSCGGPPCLEGDREHAIHNMRLENMHLKEEHEKVSRLLSRYLESQMLPPDQFQQGFFPIIGSSSNAAALGNPLNQVIGGSSSHDPNLALHMMDGGHNFLASEGIEKNLMAKVAATAMDELVRLVRINEPFWIKSSSPDGKFCLLLENYQKMFPKTKHFKGPNVRIEATKESGIVSINSLQLVDMFLDSDKWVNLFPTMVSKAETVKVIERGLPGNRSGALQLMVQQMHVLSPFVQPREFQFLRFCQQIEEGLVIADVSFDSFQQKPSIFQCWKHPSGCLIQEMPNGCCMVTWVEHVEVDDKIQIHPLYKDIIVKGVAYGAERWIMELQRICERFAAFYLEKIPDHDAAGVINSLEGRRSIMNFSHRMLKIFCESITMADGLDFPLCDVVNTSGVRVSIRESKINGQPSGMIVAAATSIWLPVHYMKVFEFFLDDKNRAQWDVLTCGNQAHEVAHISNGIHPGNCVSVIRPFIPSENNALILQESFTTPMGSYVIYAPTDVATMTAAIMGENSSMLPVLPSGFVICPDGETNSAMGAFDGADTERLGGSLLTVAFQILASADGRNMPNRKAGAAVNSLLTSTILRVRDALNCNN 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01378 706 Pfam START domain 225 446 IPR002913 GO:0008289
Vimu2g01378 706 ProSiteProfiles START domain profile. 215 449 IPR002913 GO:0008289
Vimu2g01378 706 SMART START_1 224 446 IPR002913 GO:0008289
Vimu2g01378 706 Pfam Homeodomain 26 79 IPR001356 GO:0003677
Vimu2g01378 706 FunFam Homeobox-leucine zipper protein HDG1 11 97 - -
Vimu2g01378 706 MobiDBLite consensus disorder prediction 1 34 - -
Vimu2g01378 706 ProSitePatterns 'Homeobox' domain signature. 56 79 IPR017970 GO:0000981|GO:0006355
Vimu2g01378 706 ProSiteProfiles 'Homeobox' domain profile. 21 81 IPR001356 GO:0003677
Vimu2g01378 706 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 23 703 IPR042160 -
Vimu2g01378 706 CDD START_ArGLABRA2_like 219 445 - -
Vimu2g01378 706 Gene3D - 10 95 - -
Vimu2g01378 706 Gene3D - 223 430 IPR023393 -
Vimu2g01378 706 SUPERFAMILY Bet v1-like 478 701 - -
Vimu2g01378 706 SUPERFAMILY Homeodomain-like 17 85 IPR009057 -
Vimu2g01378 706 SUPERFAMILY Bet v1-like 217 448 - -
Vimu2g01378 706 SMART HOX_1 23 85 IPR001356 GO:0003677
Vimu2g01378 706 CDD homeodomain 29 82 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01378 Vimu-Chr2 9330231 9335469 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01378 23 703 Homeobox Transcription Factor Family AT1G73360 42.216 0.0 562
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vimu2g01378 START 2e-34 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01378 K09338 - gmx:100795075 1041.18