Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01375 ATGGATTTTGCCATGGGAGCTGCAGGTGGATCTGGAGATGATGATAAACACAATCACAGTCACAATAAGACCTCAAACAAAGGGAAAAAGGCCTACCATGGTCACAACTCTGATAGAACATCTAAGCTTCAAGAAATGTTCCGGAAGTGTCCACATCCGACAAAAAGCACAAGATTGCAAATAGCAGAAGATTTGGGACTTGAGCCAAAACAAGTAAAATTTTGGTTTCAGAATAAGAGAACTCAAATAAAGACTCAAACTGAGCGAATAAATAACAATATCTTCCGTACTGAGAATGAAAGGATACGTAAAGATAACCTCTTGTTAAGAGAGGCATTCAAAAATATAATTTGTCCATCTTGTGGAGGTCAATCAAACGTTGATGAAAAACGTAAACATTCTCTAGAACAACTTCGTCTTGAAAATGCACGTCTTAGAGAAGAGAATGAGAGAGTGTCTAATGCTCTTGCAAAGTACATGGATAAACCAGTGTTAGACCTAAACATGATGAACTCCACTCTTATGAGGGGATCTTCATCGCGTGCTCCATTAATACCTGGAAGTTATCTTAGACTAAATGGTTCATTTCAAGTTGAAGATACCATGCTCAATCGTGGGAGCAGAATAACACAAATGGAAAAAACAATGATGTCACAGATTGCAGTGACTGCTAAGGAAGAATTAATGAAGCTTCTGTGTACCAATGAACCCATGTGGGTCAAATCTTCAGATCATCAAAGATTTGTTCTTCATCTAGAAAGCTACCAAGCATTCTTTCCAAGGATTAATCACTTCAAGAATTCCCAAGCTCGTGTAGAATCATCAAAAGATTCACGGGTTGTGAGAGTTCAGGCAATGAAATTAGTTGACATGTTTCTGAATTCGGAAAACTGGACAGATCTTTTCTCAACAATTGTTACAAAAGCTCGCACAATCAAAGTAATTGAAAATGGTTCAAACAGAAGTGGAGTTTTGTTGTTGATGAGTGAAGAGATGCATGTTCTTTCACCTTTAATTCCATCTCGGGAATTGGTCTTCCTTCGTTATTGTGAACAAATTGAAGCACATTCATGGGTGATAGTAGATGTTTCTGTTGACTGCACCAACGGGAACAACAATCCTAAATATTGGAAGTTTCCTTCCGGATGCATAATTCATGAAATTTCAAATGAGTTGTGCTGGATTTCTTGGGTTGAACATGTGGAAGTGGATGAGAAGATTGAAACGCATCAACTATACAAAGATATAGTCAATAACAGCATTGCATATGGAGCAGAAAGATGGCTTTTGGAACTTCAAAGAATGTGTGCAAGATTTATAAGTGTTGGGGATGAAATACCTGATTATGACATCAATGGAGTGATAACTGCTATAGGAGGAAGGAAAAATATGGTGAAGTTTTCTCATGGAATGGTGAAAAACTTCTATGGAATTTTAAACATTTCAAGTAAGACAGAGTGCGTTGAACATTTAGCTAAGGAGAATACTAATATTATGGTTCTTGCTCGGAAATACACAAATCCAAGTCAATCAAATGCCATGATTATATTCATTGCTACTACTTCTTTTCGGCTACCACTCCCTTCGGAATATGTTTTTGACTTCTTTAGAGATCCAACAAAACGTGCTAAGTGGGATGTTATGTGTTGCGAGAATCAAGTGCACGAAGTTGCACGAGTCTCCATTGGAACTAACCCTAGCAACCGCATATCGATTATACAGCCTCTTCACCGAACTGCTAATAACATGGCCATTATTCAGGAAAGTTGTATTGATGGTTTGGGATCATATGTTGTGTATTCCCCTGTGAATATATCTGACGTAAAGATGGCTGTAAATGGTGAAGATTCAGCAAGAATGTCAATCTTTCCATCAGGCATTGTCATATCAAAAGATGTTCAATCTATCACACATGCTTCTGCACGGAGTAATGGAAGTGGTGATACGAGAACACACGGTACTCTATTGACTGTGACTTTTCAAATACTGATGAATGGTCCAACAACTGTGGTAGCAGAATCCAAGACTGTTATTAACTCTCTCATGACCTCAACAATACAAAATATAAACCATGCTTTGATAAATGGTTCTAATATAGAGTTTTAG 2106 0.3765 MDFAMGAAGGSGDDDKHNHSHNKTSNKGKKAYHGHNSDRTSKLQEMFRKCPHPTKSTRLQIAEDLGLEPKQVKFWFQNKRTQIKTQTERINNNIFRTENERIRKDNLLLREAFKNIICPSCGGQSNVDEKRKHSLEQLRLENARLREENERVSNALAKYMDKPVLDLNMMNSTLMRGSSSRAPLIPGSYLRLNGSFQVEDTMLNRGSRITQMEKTMMSQIAVTAKEELMKLLCTNEPMWVKSSDHQRFVLHLESYQAFFPRINHFKNSQARVESSKDSRVVRVQAMKLVDMFLNSENWTDLFSTIVTKARTIKVIENGSNRSGVLLLMSEEMHVLSPLIPSRELVFLRYCEQIEAHSWVIVDVSVDCTNGNNNPKYWKFPSGCIIHEISNELCWISWVEHVEVDEKIETHQLYKDIVNNSIAYGAERWLLELQRMCARFISVGDEIPDYDINGVITAIGGRKNMVKFSHGMVKNFYGILNISSKTECVEHLAKENTNIMVLARKYTNPSQSNAMIIFIATTSFRLPLPSEYVFDFFRDPTKRAKWDVMCCENQVHEVARVSIGTNPSNRISIIQPLHRTANNMAIIQESCIDGLGSYVVYSPVNISDVKMAVNGEDSARMSIFPSGIVISKDVQSITHASARSNGSGDTRTHGTLLTVTFQILMNGPTTVVAESKTVINSLMTSTIQNINHALINGSNIEF 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01375 701 SUPERFAMILY Homeodomain-like 21 91 IPR009057 -
Vimu2g01375 701 Gene3D - 218 438 IPR023393 -
Vimu2g01375 701 Pfam START domain 220 438 IPR002913 GO:0008289
Vimu2g01375 701 ProSiteProfiles START domain profile. 210 441 IPR002913 GO:0008289
Vimu2g01375 701 ProSiteProfiles 'Homeobox' domain profile. 26 86 IPR001356 GO:0003677
Vimu2g01375 701 CDD homeodomain 29 86 IPR001356 GO:0003677
Vimu2g01375 701 SMART HOX_1 27 90 IPR001356 GO:0003677
Vimu2g01375 701 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 27 693 IPR042160 -
Vimu2g01375 701 Coils Coil 135 162 - -
Vimu2g01375 701 CDD START_ArGLABRA2_like 214 437 - -
Vimu2g01375 701 Pfam Homeodomain 33 84 IPR001356 GO:0003677
Vimu2g01375 701 SUPERFAMILY Bet v1-like 461 689 - -
Vimu2g01375 701 SMART START_1 219 438 IPR002913 GO:0008289
Vimu2g01375 701 ProSitePatterns 'Homeobox' domain signature. 61 84 IPR017970 GO:0000981|GO:0006355
Vimu2g01375 701 Gene3D - 14 101 - -
Vimu2g01375 701 SUPERFAMILY Bet v1-like 211 438 - -
Vimu2g01375 701 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01375 Vimu-Chr2 9284544 9289464 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01375 25 693 Homeobox Transcription Factor Family AT1G73360 39.255 1.32e-164 489
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vimu2g01375 START 2.3e-35 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01375 K09338 - gmx:100794552 872.848