Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01369 ATGGTCTTCCATGGAGACGGCGGCTGCGGTGGTGGTGTCATGAAGCACCTCGCCGGCGAGCCTCTTTCAAACAGCATGGGTGATCAAGGAGGCAAACAGACAATGGAAGAGGCACTTGTTGGGGAAACAGATGACAACACACAGCAGTTGAACAATACACGTGATGTTCTTCCATTTGCTAGAAGCTATCAACTTGAAGCATTGGATAATGCTTTACGTGAGAATACCATAGTGTATCTGGAGACCGGTTCCGGCAAGACTTTGATAGCGGTCATGCTTCTTCGCAGCTATGCTCATCATCTGAGAAAGCCTTCTTCTTCTATTGCAGTGTTCTTAGTTCCCCAAGTTGTGTTGGTTTCTCAACAATCCGAAGTCGTGAAAAAGCATACTGATTTAAAAGTGGGAACGTATTGGGGAGCCATGGGAGTTGACTTTTGGGACGCTGCTATGTGGAAAGAAGAAATGGAGAAACATGAGGTGCTTGTCATGACTCCTGCAATATTGCTGAGTTGCCTGAGGCATAGCTTCCTCAAACTGAATATGATTAAGGTTTTAATAATGGACGAGTGTCATCATGCTAGGGGCAAACACCCTTACGCGTGCATCATGACTGAGTTCTATCATCACCAATTAAATTTAGGTGTCTCTGATCTCCCTCGAATTTTTGGGATGACTGCATCTCCAATTAAGTCGAAAGTCGGAAATTCAGAATTATCCTGGTCAGAGAATATTCGGACTCTAATTACACTAATGCATTCTAAGGTATATACATGTGTAAGTGAAGCTGTCCTCGGAGAGTTCATGCCATCATCAACACCAAAATTCAAGTTTTATAGGGACAGTGGAATTCAATTTGCTTTATTTGAAGACTTAGCATTGAAACTCAAGATATTAAAAGAGCAGAAGATGGCGAAGTTGGACGTTGAACGGAGTGTGAAAGAGAGGAACTTGTTCTTTGTTGGATACAAAAATGTGATGGGGTCACGGAGAGTTTCATGGAGGATCTTGTCATTGATAGAGCAGAAAGAGGAGTCAAAAGGGAATGAGCTGAATGTCAAACGCATAAGGGATTACAGGCACAAGGTTGAGAGGGAGTTGTCTAATACTTATAGTGCTGTTAGGATAATTTTAGAGGAGCATCTTATCCTATCCACAAATATCGTGGGGTCCACGATGTTTTATTATAAGATGAAAGGAGACTATTACAGGTACTTGGCAGAATTCAAAGCTGGTAATAGAAATATGGAGCATGGATTCACTCTAAGAAGTTCAGATTTCACTAAATCAGCTGCTGAGTCTGCAGAAAAAAGAATAGCAAAGATTTTTTGCGCTTTAATGTTTTGCCTAGATGAGCTTGGTGTTTGGTTGACTTTAAAGGCTGCAGAATCTTTGTCATCCAATGAATTCGAATCATTTTCATGGGGACATTGTGGGGATACAGTTGTTAAAAACTTTATTTTGGCTTGTGTGCAGACACTGAAAACTTACGTACCATGCGGTCCTCAGTGGTCTATTGGCAACAATATTAAATCTGATGTGGAGATGGGGCTGTTGACCACCAAAGTTTGCTGTCTTATCGACTCTCTACTTGAGTACAGGGGTTTGACTGATATAAGATGCATAATTTTTGTGCAAAGGGTCGTTACAGCCATTGTCCTTCGGGATCTATTGAATACCTTACTTCCAGCAATCAATAACTGGAAGACTAAATTCATTGCTGGACACAAATATCGATTACAAAATCAGTCTAGGAAAGAACAAAATAAAATTGTGGAAGAATTTCAAAGGGGTTTGGTTAATATCATTGTTGCAACATCAATTCTTGAAGAAGGTTTAGATGTTCAAACTTGCAATCTAGTTATTAGATTTGATCCATCTCCTACAGTGTGTAGTTTTATACAGTCCCGAGGACGAGCCAGAATGAAAAATTCAGATTACTTATTAATAGTTAAGAGTGGGGATTCAGCTACATGCTCTCGACTAGAGAAATACCTTGCAAGTGGGGATATTATGAGGAAGGAGGCATTACGTCATTCTTCACTTCCATGTGATCCTTTAGAAGGTGATCAATTTGATGAAGAAACTTATCGCGTTGCAAACACTGATGCCTTTGCAAATCTTAGTTCTAGCATTAGTTTGATTCACTTGTATTGCTCACGGCTCCCTGCAGATGGGTACTTTAAACCAGCTCCAAGGTGGGACAAAGAGACTGCAACTTTATATCTTCCCAAGAGCTGCCCGCTAAAGCCTATTCATGTAGAAGGTGACAAAAATCTCTTAAAGAATATTGCATGCCTTGAAGCATGCAAACAACTTCACAAGATTGGAGCTCTGACAGATAATCTTGTTCCTGATATTGTCATTGAAGAAGCAGAGATGGAGGAATTTGGGAATGAACATTATGATGAAAACCAACCAATTTATGCTCCATTTGAATTGGTCAATTGTGTGTCAAATAGTAGCCACACAACTTACCATTGTTATTTGATGGAGTTAAGTCAAAAATTTTGCTATCATACATCTGTGCAAGATATTTTTCTTGCCTTAAGAATTAAGCTTGATCCAGAAATTGGATGCATGCAATTTGATATGGATTTTGACAGAGGTGCTGTCTCGGTAAAGTTAAGTTACAAAGGAACCATTAATCTTTCCTTAGATCAGGTTCTTTTGTGTAAAAAATTCCAGGTCACTTTGCTTAGAATTCTGATAGACAATTGTATGAATAAGTTCACAACTGGTTTAGACAAATGCTTTTTGAAAGATGATCTTGAGATTGATTATCTTCTGCTTCCAGCTACTGGTAAACATCCAAATTCGACCATTGATTGGTTGATTGTTAATTCTGTAAATCCATCTAATATTAGGTGCAAGTATCATCAACCCAACATAAGCACAAAAAGTGGTCTAGTTTGCACTTGTAAGCTACAGAATGCATTGGTGTGTACTTCACATGCTTCTGGTAAGATTTATTTCTATATCACTACTGGTGTTATGGAATTGGACACAAACTCGCCTATGATCCTAAGGAATGGTGAAATAACTACATACAAGAAGTACTTTGAACAATATCATGGTATTCAATTGCAATTTGAACATCAGCGGCTCTTCAGAGCAAAACACAAGTTTCAAGTTAAAAATCACTGTCATGGACTCAGACAGCGAAAGGAAAGAGAAGCAAGCCATGCCTTCGTTGAATTACCCCCAGAACTGTGCTCTATAGTAATGTCACCGATAACAGATGGTGTAATTTATTCCTTCTCATTTATTCCATCAATCATGCATCGGCTTGAATCATTGCTTGCAGCTTTCAACTTAAAAAAGATGTACTCGGATCATTGCACGGAGAATGAAATTCAAACAACCAAGGTGTTGGAAGCAATCACTACAAAAGGGTGCAAAGAGGCCTTTCATTATGAGTCTCTAGAGACTCTTGGTGATTCTTTTTTAAAATATGCTGCCAGTCAATTGCTGTTTAAAACATTTCAAAATCACCATGAAGGTCTGCTCAGTGTGAAGCGTGAAAAGATCATATCCAATGCTGCCCTCTGCAAGTTAGGGTGCAATTCTGGACTTGCGGAGATGCACACCCTCAAAGTTCTGCAAGTTAAACAGTTTGCTTGCTGGAGTAGTATGGAGAGTGAGCAGAAAAATGTTGAGTGTGTGTACAGAGAGCTAGGCTCTGGACTGGGCTTCATACGAAATGAGCCTTTTGATCCTGACGTCTGGATTATTCCTGGTGATAATTCTAGAACTTTTAAATACACAGAGTTGATTACCGAGGGGAAAAAGAATTATGTTTATGGAAAAAGAAAATTAAAACGGAAGATCGTTGCTGATGTTGTTGAGGCACTGATTGGTGCCTTCCTCAGCACTGGTGGTGAAAAAGCTGCATTGATGTTTATGGATTTGGTTGGGATTAAAGTGAGTTTTGATAAAATAGCCTATGATAGGCACTTTGAGATTCAACCAGAGAAGCTGGTAAATGTCGAATTTCTGGAATCTCAATTAAAGTACTCATTTCATGACCGTTCTCTTTTAGTGGAAGCTCTAACACATGGTTCCTACATGCTTCCTGAAGTTCCTAGATGTTATCAGCGATTAGAATTTCTGGGAGATTCAGTCCTTGACTATTTGATAACGTGGTATTTGTACAATAAATATCCTGGCATGTCCCCTGGTCAGTTAACCGACATGAGATCAGCTTCTGTGAATAATGATTGTTATGCATGGTCTACCATTAAGCATGGATTGCATAAACATGTACTCCATGCGTCACAAGAACTGCATATGCATATTGCTGTCACACTTGACAATTTTGAGAAGTTGTCGTCGTCATCAACTTTTGGATATGAGTGTGAGACATCGCTCCCTAAGGTACTAGGAGACATTTTAGAGTCTCTAGCTGGAGCCATTCTTGTTGATTCAGGATATGATAAGGAGGTTGTGTGGCAAAGCATCAGGCCATTTTTGGAACCCCTTGTAACACCTGAAACATTGAAGCTCCATCCAATCAGAGAGTTTTATGAAGTTTGTCAGAAAAGAAGCTATAGAATTATACAAGATGTGGTGTCTCGCAAAGGGGGTGTGACCAATTACAGAATGGAGGTAGAAGCTGATGGGGTTATTCATCAGTACGAGTATACTGGTGCTGCACTTAAGGACACAGCAAAAAAGATTGTTTGCAAGGAACTTTTGAAAAGGATATCATTTCAGTAA 4716 0.395 MVFHGDGGCGGGVMKHLAGEPLSNSMGDQGGKQTMEEALVGETDDNTQQLNNTRDVLPFARSYQLEALDNALRENTIVYLETGSGKTLIAVMLLRSYAHHLRKPSSSIAVFLVPQVVLVSQQSEVVKKHTDLKVGTYWGAMGVDFWDAAMWKEEMEKHEVLVMTPAILLSCLRHSFLKLNMIKVLIMDECHHARGKHPYACIMTEFYHHQLNLGVSDLPRIFGMTASPIKSKVGNSELSWSENIRTLITLMHSKVYTCVSEAVLGEFMPSSTPKFKFYRDSGIQFALFEDLALKLKILKEQKMAKLDVERSVKERNLFFVGYKNVMGSRRVSWRILSLIEQKEESKGNELNVKRIRDYRHKVERELSNTYSAVRIILEEHLILSTNIVGSTMFYYKMKGDYYRYLAEFKAGNRNMEHGFTLRSSDFTKSAAESAEKRIAKIFCALMFCLDELGVWLTLKAAESLSSNEFESFSWGHCGDTVVKNFILACVQTLKTYVPCGPQWSIGNNIKSDVEMGLLTTKVCCLIDSLLEYRGLTDIRCIIFVQRVVTAIVLRDLLNTLLPAINNWKTKFIAGHKYRLQNQSRKEQNKIVEEFQRGLVNIIVATSILEEGLDVQTCNLVIRFDPSPTVCSFIQSRGRARMKNSDYLLIVKSGDSATCSRLEKYLASGDIMRKEALRHSSLPCDPLEGDQFDEETYRVANTDAFANLSSSISLIHLYCSRLPADGYFKPAPRWDKETATLYLPKSCPLKPIHVEGDKNLLKNIACLEACKQLHKIGALTDNLVPDIVIEEAEMEEFGNEHYDENQPIYAPFELVNCVSNSSHTTYHCYLMELSQKFCYHTSVQDIFLALRIKLDPEIGCMQFDMDFDRGAVSVKLSYKGTINLSLDQVLLCKKFQVTLLRILIDNCMNKFTTGLDKCFLKDDLEIDYLLLPATGKHPNSTIDWLIVNSVNPSNIRCKYHQPNISTKSGLVCTCKLQNALVCTSHASGKIYFYITTGVMELDTNSPMILRNGEITTYKKYFEQYHGIQLQFEHQRLFRAKHKFQVKNHCHGLRQRKEREASHAFVELPPELCSIVMSPITDGVIYSFSFIPSIMHRLESLLAAFNLKKMYSDHCTENEIQTTKVLEAITTKGCKEAFHYESLETLGDSFLKYAASQLLFKTFQNHHEGLLSVKREKIISNAALCKLGCNSGLAEMHTLKVLQVKQFACWSSMESEQKNVECVYRELGSGLGFIRNEPFDPDVWIIPGDNSRTFKYTELITEGKKNYVYGKRKLKRKIVADVVEALIGAFLSTGGEKAALMFMDLVGIKVSFDKIAYDRHFEIQPEKLVNVEFLESQLKYSFHDRSLLVEALTHGSYMLPEVPRCYQRLEFLGDSVLDYLITWYLYNKYPGMSPGQLTDMRSASVNNDCYAWSTIKHGLHKHVLHASQELHMHIAVTLDNFEKLSSSSTFGYECETSLPKVLGDILESLAGAILVDSGYDKEVVWQSIRPFLEPLVTPETLKLHPIREFYEVCQKRSYRIIQDVVSRKGGVTNYRMEVEADGVIHQYEYTGAALKDTAKKIVCKELLKRISFQ 1571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01369 1571 SMART riboneu5 1121 1312 IPR000999 GO:0004525|GO:0006396
Vimu2g01369 1571 SMART riboneu5 1344 1499 IPR000999 GO:0004525|GO:0006396
Vimu2g01369 1571 Gene3D Ribonuclease III domain 1116 1304 IPR036389 GO:0004525|GO:0006396
Vimu2g01369 1571 ProSiteProfiles Ribonuclease III family domain profile. 1329 1476 IPR000999 GO:0004525|GO:0006396
Vimu2g01369 1571 ProSiteProfiles PAZ domain profile. 974 1075 IPR003100 GO:0005515
Vimu2g01369 1571 Pfam 14-3-3 protein 301 438 IPR023410 -
Vimu2g01369 1571 SMART ultradead3 56 253 IPR014001 -
Vimu2g01369 1571 FunFam Endoribonuclease dicer-like protein 57 297 - -
Vimu2g01369 1571 Pfam Dicer dimerisation domain 710 784 - -
Vimu2g01369 1571 PRINTS 14-3-3 protein zeta signature 309 338 IPR000308 -
Vimu2g01369 1571 PRINTS 14-3-3 protein zeta signature 358 382 IPR000308 -
Vimu2g01369 1571 PRINTS 14-3-3 protein zeta signature 389 411 IPR000308 -
Vimu2g01369 1571 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 67 246 IPR014001 -
Vimu2g01369 1571 FunFam Endoribonuclease dicer-like 1 1323 1497 - -
Vimu2g01369 1571 Gene3D Dicer dimerisation domain 706 793 IPR038248 -
Vimu2g01369 1571 SUPERFAMILY RNase III domain-like 1121 1308 IPR036389 GO:0004525|GO:0006396
Vimu2g01369 1571 SMART 1433_4 279 511 IPR023410 -
Vimu2g01369 1571 Gene3D paz domain 954 1080 - -
Vimu2g01369 1571 SMART PAZ_2_a_3 948 1101 IPR003100 GO:0005515
Vimu2g01369 1571 Pfam DEAD/DEAH box helicase 62 196 IPR011545 GO:0003676|GO:0005524
Vimu2g01369 1571 Pfam Helicase conserved C-terminal domain 538 640 IPR001650 -
Vimu2g01369 1571 CDD RIBOc 1344 1499 IPR000999 GO:0004525|GO:0006396
Vimu2g01369 1571 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 108 655 IPR027417 -
Vimu2g01369 1571 CDD DEXHc_dicer 60 258 - -
Vimu2g01369 1571 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 525 689 IPR001650 -
Vimu2g01369 1571 Pfam Ribonuclease III domain 1139 1293 IPR000999 GO:0004525|GO:0006396
Vimu2g01369 1571 Pfam Ribonuclease III domain 1365 1476 IPR000999 GO:0004525|GO:0006396
Vimu2g01369 1571 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 710 792 IPR005034 GO:0016891
Vimu2g01369 1571 ProSiteProfiles Ribonuclease III family domain profile. 1092 1293 IPR000999 GO:0004525|GO:0006396
Vimu2g01369 1571 Gene3D - 59 298 IPR027417 -
Vimu2g01369 1571 ProSitePatterns Ribonuclease III family signature. 1365 1373 IPR000999 GO:0004525|GO:0006396
Vimu2g01369 1571 SMART helicmild6 555 642 IPR001650 -
Vimu2g01369 1571 CDD RIBOc 1124 1301 IPR000999 GO:0004525|GO:0006396
Vimu2g01369 1571 PANTHER DICER-RELATED 74 1567 - -
Vimu2g01369 1571 FunFam Endoribonuclease dicer-like 1 512 676 - -
Vimu2g01369 1571 Pfam PAZ domain 971 1098 IPR003100 GO:0005515
Vimu2g01369 1571 Gene3D Ribonuclease III domain 1320 1497 IPR036389 GO:0004525|GO:0006396
Vimu2g01369 1571 SUPERFAMILY RNase III domain-like 1328 1496 IPR036389 GO:0004525|GO:0006396
Vimu2g01369 1571 Gene3D - 517 671 IPR027417 -
Vimu2g01369 1571 FunFam Endoribonuclease dicer-like 1 705 793 - -
Vimu2g01369 1571 SUPERFAMILY PAZ domain 959 1076 IPR036085 GO:0005515
Vimu2g01369 1571 Gene3D - 299 442 IPR036815 -
Vimu2g01369 1571 SUPERFAMILY 14-3-3 protein 302 436 IPR036815 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01369 Vimu-Chr2 9238914 9257580 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01369 301 416 14-3-3 family AT1G22300 61.207 9.27e-41 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01369 K11592 - gmx:100805537 1824.68