Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01362 ACTATGAAGCCATTTAACTTTTTAGTGTTATCTTTGTATTTCTTCTCCGTGGTGGGGCAGCTTCCTTCTCAGGATATTTTAGCATTGCTGGAGTTCAAGAAAGGCATCAAACACGACCCCACTGGCTATGTGCTCAGTTCCTGGAATGAGGAATCCATTGATTTTGATGGATGCCCATCTTCATGGAATGGTGTTTTGTGCAATGGTGGTAATGTTGCCGGGGTTGTCCTTGATAACTTGGGTCTCTCTGCTGACACAGACTTGAGTGTGTTTTCAAATCTCACTAAGCTTGTGAAACTCTCCATGTCCAACAATTCCATAACAGGAAATCTACATGGCAGCATTGCTGAGTTCAAAAGCCTTGAATTCCTGGATATTTCCAATAACCTCTTTTCCTCATCTTTGCCATTAGAAATTGGTATGTTAAGCAGTCTGCAGAATCTGTCTTTGGCTGGAAATAATTTCTCTGGTCCAATTCCCGATTCAGTGTCAGAAATGGCTTCCATCAAGTCCATGGATTTGAGCCGCAACTCCTTCTCCAGAGAGCTGCCAGTGTCGTTGACTAAGGTGACTAGCCTTGTGTCTCTTAACTTGTCTCATAACAGCTTCACTGGAAAAATTCCCAAAGGTTTTGAGCTGATCCCTGCTCTTGAAAAACTTGACTTGCATGGTAATATGCTTGAAGGTAATTTGGATGTTGAATTTATGCTTTTATCGAGTGCCAGCTATGTTGATTTAAGTGAGAACATGCTGTCTAGTTCTGATTCCAAGCAGAAGTTTCTACCGCGACTATCTGAAAGTATTAAGCATCTGAATTTAAGCCACAACAATCTTACTGGATCATTGGCCAGTGGAGTTGCAGAACCGGTTTTTGAAAACTTGAAAGTGTTAGACCTCAGTTACAATCAGTTGGATGGAGAATTGCCTGGATTTGATTTTGTTTATGATCTCCAGGTCCTCAGGCTTAGCAACAACAGGTTTTCAGGATTTATTCCTAATGGCCTACTGAAAGGAGACTCTTTGGTTTTAACAGAACTGGATTTGAGTGGCAACAATCTCTCTGGGCCACTAAGCATAATTACATCAACAACACTTCACTCTCTTAACCTCTCATCAAATCAGTTCACTGGCGAACTGCCACTGCTGACTGGAAGCTGTGTTGTACTTGATCTCTCAAACAACAAATTAGAGGGAAATTTAACCAGGATGTTGAAATGGGGGAATATAGAATTTCTTGATCTCAGTGGCAATCATTTGATGGGGACCATACCTGAGGAAACTCCTCAATTTTTGCGTCTAAATTATTTGAATTTATCCCATAATTCTCTTAGCAGCTCCCTTCCAAAAGTCTTGACACAGTATCCAAAGCTGACAGTGCTTGACATTAGTTTCAACCAATTAGATGGACGGTTTCTATCTGGTCTGCTCACAATGCCCTCTTTGCAAGAGCTACATCTTGAAAATAATGTGATCTCTGGTTCCATCAATTTCTCATCTTCTCCTGACCAATCCGATCTTCAGATTCTTGATCTTTCTCACAACCAGCTTAGTGGCTATTTTCCTGATGAGTTTGGGTCATTAGCTGGCCTTAAAGTGCTAAATATTGCTGGAAATAATTTTTCTGGCTCTCTTCCAACCACCATTGCTGACATGAATTCACTTGACTCAATGGATATATCAGATAATCATTTTACTGGTCCTCTACCAAATAACATGCCAAAGGGGCTCCAAAACTTCAATGCTTCCGGAAATGATCTGTCTGGACTCGTCCCAGAAGTTTTTAGGAAGTTTCCTAGTTCTTCTTTCTTTCCTGGTAATTCCAAGTTACATTTTCCAAATGGTCCTCCAGGATCAACTGCACCTGTTGAAGGTTCCAAGAAGAAGCATTTGAACACCATTGTTAAAGTAATAATCATAGTGTCATGTGTGGTTGCGTTCTTCATATTAATCCTGCTTGCAGTCTTCATACACTATATACGTATATCAAGATCTCCACCAGAATATGATACAAGTAAGGATATCCACAGGCATCCTCAACCAATTATCTCGGCTCCTGTTCGAACTACTGATAGGGGTGGTGCTTTGGTTGTTTCAGCTGAGGACCTTGTGGCCACACGCAAAGAGTCGCCATCAGAGGTAATCAGCTCTGATGAAAAAATGGCAGCTGTAACGGGGTTCTCTCCATCAAAACAAAGCCACTTTTCATGGTCACCAGAATCTGGTGATTCATTCACTGGTGAAAATCTTGCAAGACTAGATACGAGGTCACCAGATCGATTGATTGGAGAGCTGCATTTTCTTGATGATTCGATAACATTGACACCTGAGGAGCTCTCGAGGGCCCCAGCTGAAGTTTTGGGAAGAAGTAGTCATGGTACTTCTTACAAGGCCACCCTGGAGAATGGTTTGTTGTTGAGAGTGAAGTGGTTGAGAGAAGGAGTAGCAAAACAGAGAAAAGAATTTGTCAAGGAAACCAAAAAATTTGCCAACATCAGACATCCAAATGTTGTGGGATTGAGAGGATATTATTGGGGCCCTACTCAGCACGAGAAGCTCATCCTTTCAGATTACATCTCACCAGGAAGTCTTGCAAGCTTTCTTTATGATCGACCAGGAAGAAAAGGTCCACCTTTAACATGGATGCAGAGACTCAAAATAGCAGTTGATGTAGCACGTGGCCTGAACTATCTCCATTTTGATCGTGCCGTCCCTCATGGGAACCTCAAAGCCACAAATGTGTTGTTAGACACAACTGATATGAATGCACGTGTGGCCGATTACTGTCTTCACCGGCTCATGACTCAAGCAGGTACTATTGAACAGATTCTCGATGCTGGGGTCTTGGGTTATCGTGCACCCGAGTTAGCTGCCTCCAAGAAGCCAATGCCCTCCTTCAAGTCAGATGTTTATGCTTTTGGAGTGATACTTTTGGAACTTCTAACCGGAAGGTGTGCTGGTGATGTGATATCTAGTGAGGAAGGAGGTGTTGACCTGACAGATTGGGTGAGGTTGCGTGTGGCAGAAGGCAGAGGCTCAGAATGTTTTGATGCTACCTTGATGCCAGAAATGAGCAATCCTGTTGTAGAGAAGGGAATGAAGGAGGTCCTTGGAATAGCCATGAGATGCATTCGATCAGTTTCTGAAAGGCCTGGCATCAAAACTATATATGAAGATCTCTCTTCTATATAG 3189 0.424 TMKPFNFLVLSLYFFSVVGQLPSQDILALLEFKKGIKHDPTGYVLSSWNEESIDFDGCPSSWNGVLCNGGNVAGVVLDNLGLSADTDLSVFSNLTKLVKLSMSNNSITGNLHGSIAEFKSLEFLDISNNLFSSSLPLEIGMLSSLQNLSLAGNNFSGPIPDSVSEMASIKSMDLSRNSFSRELPVSLTKVTSLVSLNLSHNSFTGKIPKGFELIPALEKLDLHGNMLEGNLDVEFMLLSSASYVDLSENMLSSSDSKQKFLPRLSESIKHLNLSHNNLTGSLASGVAEPVFENLKVLDLSYNQLDGELPGFDFVYDLQVLRLSNNRFSGFIPNGLLKGDSLVLTELDLSGNNLSGPLSIITSTTLHSLNLSSNQFTGELPLLTGSCVVLDLSNNKLEGNLTRMLKWGNIEFLDLSGNHLMGTIPEETPQFLRLNYLNLSHNSLSSSLPKVLTQYPKLTVLDISFNQLDGRFLSGLLTMPSLQELHLENNVISGSINFSSSPDQSDLQILDLSHNQLSGYFPDEFGSLAGLKVLNIAGNNFSGSLPTTIADMNSLDSMDISDNHFTGPLPNNMPKGLQNFNASGNDLSGLVPEVFRKFPSSSFFPGNSKLHFPNGPPGSTAPVEGSKKKHLNTIVKVIIIVSCVVAFFILILLAVFIHYIRISRSPPEYDTSKDIHRHPQPIISAPVRTTDRGGALVVSAEDLVATRKESPSEVISSDEKMAAVTGFSPSKQSHFSWSPESGDSFTGENLARLDTRSPDRLIGELHFLDDSITLTPEELSRAPAEVLGRSSHGTSYKATLENGLLLRVKWLREGVAKQRKEFVKETKKFANIRHPNVVGLRGYYWGPTQHEKLILSDYISPGSLASFLYDRPGRKGPPLTWMQRLKIAVDVARGLNYLHFDRAVPHGNLKATNVLLDTTDMNARVADYCLHRLMTQAGTIEQILDAGVLGYRAPELAASKKPMPSFKSDVYAFGVILLELLTGRCAGDVISSEEGGVDLTDWVRLRVAEGRGSECFDATLMPEMSNPVVEKGMKEVLGIAMRCIRSVSERPGIKTIYEDLSSI 1062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01362 1062 Pfam Leucine Rich Repeat 192 212 IPR001611 GO:0005515
Vimu2g01362 1062 Pfam Protein tyrosine and serine/threonine kinase 784 982 IPR001245 GO:0004672|GO:0006468
Vimu2g01362 1062 Gene3D Ribonuclease Inhibitor 259 619 IPR032675 -
Vimu2g01362 1062 PANTHER OS07G0626500 PROTEIN 9 1062 - -
Vimu2g01362 1062 Gene3D Ribonuclease Inhibitor 187 258 IPR032675 -
Vimu2g01362 1062 ProSiteProfiles Leucine-rich repeat profile. 293 315 IPR001611 GO:0005515
Vimu2g01362 1062 SUPERFAMILY Protein kinase-like (PK-like) 783 1059 IPR011009 -
Vimu2g01362 1062 ProSiteProfiles Protein kinase domain profile. 780 1062 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g01362 1062 FunFam Leucine-rich repeat receptor-like protein kinase 765 857 - -
Vimu2g01362 1062 Pfam Leucine rich repeat N-terminal domain 23 68 IPR013210 -
Vimu2g01362 1062 Gene3D Transferase(Phosphotransferase) domain 1 859 1062 - -
Vimu2g01362 1062 Gene3D Ribonuclease Inhibitor 24 186 IPR032675 -
Vimu2g01362 1062 Pfam Leucine Rich repeat 362 378 IPR001611 GO:0005515
Vimu2g01362 1062 Pfam Leucine Rich repeat 293 307 IPR001611 GO:0005515
Vimu2g01362 1062 Pfam Leucine Rich repeat 343 355 IPR001611 GO:0005515
Vimu2g01362 1062 Pfam Leucine Rich repeat 267 280 IPR001611 GO:0005515
Vimu2g01362 1062 FunFam Pollen receptor-like kinase 1 858 1062 - -
Vimu2g01362 1062 FunFam LRR receptor-like serine/threonine-protein kinase GHR1 21 265 - -
Vimu2g01362 1062 SMART LRR_typ_2 527 550 IPR003591 -
Vimu2g01362 1062 SMART LRR_typ_2 190 213 IPR003591 -
Vimu2g01362 1062 SMART LRR_typ_2 291 313 IPR003591 -
Vimu2g01362 1062 SMART LRR_typ_2 478 501 IPR003591 -
Vimu2g01362 1062 SMART LRR_typ_2 504 526 IPR003591 -
Vimu2g01362 1062 SMART LRR_typ_2 430 453 IPR003591 -
Vimu2g01362 1062 SMART LRR_typ_2 94 117 IPR003591 -
Vimu2g01362 1062 SMART LRR_typ_2 142 166 IPR003591 -
Vimu2g01362 1062 SMART LRR_typ_2 314 338 IPR003591 -
Vimu2g01362 1062 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 382 615 - -
Vimu2g01362 1062 SUPERFAMILY L domain-like 291 596 - -
Vimu2g01362 1062 Pfam Leucine rich repeat 506 564 IPR001611 GO:0005515
Vimu2g01362 1062 Gene3D Phosphorylase Kinase; domain 1 773 857 - -
Vimu2g01362 1062 SUPERFAMILY L domain-like 47 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01362 Vimu-Chr2 9184673 9188839 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01362 10 1010 Receptor kinase-like Gene Family AT4G36180 27.797 1.77e-79 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vimu2g01362 PK_Tyr_Ser-Thr 1.3e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01362 - - gmx:100793639 1915.58