Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01352 ATGGAGATCCAACTTTTCTTACCTTTTACCTTTTTTCAAGACGATCTTAAGTTGATTCATACCAATCTAGTTAAGAGTGGTGTGAGCGCTGAACTCATTTTTGTATTGTCTGTGACATTGGATGACTGGTCAGAAGATGAAATAGATGCAATGATGGAGGTTGGGGGAAATGCTTCTGCTAATTCAATATACGAAGCTTATATTCCTGAAGGAGTTACAAAACCCGGACCAGATGCTGGTCATGAGCAGCGTTCAAACTTTATAAGGTCAAAGTATGAATTTCAAGAATTTCTGAAACCGAGTTTGCGCATTATATCTGGAAAAAGCAGTCTAGAATCAAGTTCTACAAAGAGTGCTACGGATATTTTTAGAAGTACTAGTGGTACAGAGAGACAGGAAGGTATGGTAGAATTTATTGGACTGTTGAAGGTGAAAGTAATTAAAGGCACAGATTTAGCTATCAGGGACATAAAGTCAAGTGATCCGTATGTCATTTTGAGCCTTGGCCAGCAGACTGTCCAGACATCTGTAGTGAGTAGTAACCTGAATCCAGTCTGGAATGAGGAATACATGCTGTCTGTTCCAGAGCATTATGGGCAGATGAAATTGAAAGTATTTGATCATGACACATTTTCCTCTGATGATATTATGGGAGAAGCAGACATTGATCTTCAGTCTCTGATAACATCTGCTATGGCATTTGGAGATGCTGGAATGTTTGGCGATATGCAGATAGGAAAATGGTTAAAATCCGATGACAATGCACTTCTTGAGGATAGCACAGTCAATATTGTTGATGGTAAGGTTAAACAAATGATGTCACTAAAGCTCCAGAATGTTGAATCTGGAGAATTAGATCTTGAACTCGAGTGGATTCCTCTTGATCAATAG 891 0.3883 MEIQLFLPFTFFQDDLKLIHTNLVKSGVSAELIFVLSVTLDDWSEDEIDAMMEVGGNASANSIYEAYIPEGVTKPGPDAGHEQRSNFIRSKYEFQEFLKPSLRIISGKSSLESSSTKSATDIFRSTSGTERQEGMVEFIGLLKVKVIKGTDLAIRDIKSSDPYVILSLGQQTVQTSVVSSNLNPVWNEEYMLSVPEHYGQMKLKVFDHDTFSSDDIMGEADIDLQSLITSAMAFGDAGMFGDMQIGKWLKSDDNALLEDSTVNIVDGKVKQMMSLKLQNVESGELDLELEWIPLDQ 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01352 296 ProSiteProfiles C2 domain profile. 118 237 IPR000008 -
Vimu2g01352 296 Gene3D Arf GTPase activating protein 17 103 IPR038508 -
Vimu2g01352 296 Pfam C2 domain 140 230 IPR000008 -
Vimu2g01352 296 Gene3D C2 domain 138 296 IPR035892 -
Vimu2g01352 296 SMART arf_gap_3 13 105 IPR001164 GO:0005096
Vimu2g01352 296 Pfam Putative GTPase activating protein for Arf 29 99 IPR001164 GO:0005096
Vimu2g01352 296 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 30 296 IPR044518 GO:0005096|GO:0005543
Vimu2g01352 296 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 136 233 IPR035892 -
Vimu2g01352 296 SMART C2_3c 141 236 IPR000008 -
Vimu2g01352 296 SUPERFAMILY ArfGap/RecO-like zinc finger 31 100 IPR037278 -
Vimu2g01352 296 CDD C2_ArfGAP 139 283 - -
Vimu2g01352 296 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 138 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01352 Vimu-Chr2 9120122 9122307 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01352 24 296 C2H2 Transcription Factor Family AT4G21160 67.376 6.53e-138 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01352 K12486 - gmx:100810806 458.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01352 2 9120122 9122307 Vimu2g01352 2 9120122 9122307 ECH