Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01345 ATGGCACTTACTTTGCACAAGGACTCGGCCAACAACCAGATGGATTCAAGCAAGTATGTTAGGTACACACCTGAGCAGGTTGAGGCTTTGGAGAGGGTCTATGCTGAATGTCCCAAACCAAGTTCTTTGCGGAGGCAGCAACTCATCAGAGAGTGCCCCATCCTTTCCAATATCGAACCCAAACAAATCAAAGTTTGGTTTCAGAATAGAAGGTGTCGTGAGAAGCAGAGGAAGGAGGCTTCTCGGCTGCAGACAGTGAACAGAAAGCTGACTGCGATGAACAAACTGTTAATGGAAGAGAATGACCGTTTGCAGAAGCAGGTTTCTCATCTGGTTTACGAGAATGGATATATGAAGCAACAGATACAGACTGCCTCTGCGGGCACCACCACAGACAATAGCTGTGAGTCTGTGGTAATGAGTGGTCAGAATCAACAGCAAAACCCAACACCTCAGCATCCCAATAGGGATGCCAACAACCCAGCTGGTCTTCTCGCCATAGCTGAGGAGACCCTGGCAGAGTTCCTTTCCAAGGCTACTGGAACTGCTGTCGACTGGGTCCAGATGATTGGGATGAAGCCTGGTCCGGATTCGATTGGAATCGTTGCTGTTTCCCGCAACTGTAGTGGTGTGGCAGCACGAGCCTGCGGCCTTGTGAGTCTAGAACCCACTAAGGTTGCTGAGATTCTGAAAGATCGACAGTCGTGGTATCGTGACTGCCGATGCGTGGAAGTATTGAGTATAGTTCCCACAGGGAATGGGGGTACCATAGAGCTCATGTACATGCAGACATATGCGCCCACAACATTGGCAGCGGCGCGGGACTTTTGGACACTGAGATACACGACAAGTTTGGAAGATGGAAGCCTTGTGATATGTGAGAGATCATTGACATCCTCAACTGGTGGTCCCACAGGGCCTCCTTCAACAACCTTTGTTAGAGCTGAAATGCTTCCCAGTGGTTATCTGATTAGACCGTGTGAGGGTGGTGGATCCATTATTCACATAGTTGATCATATTGATTTAGATGTATGGAGTGTTCCTGAAGTACTGAGGCCCCTATATGAATCATCAAAAATCTTAGCTCAGAAATTGACCATTGCTGCCTTGCAACATATACGACAGATAGCACAAGAATCGAGTGGAGAAATTCAATATGGTGGGGGGCGCCAGCCTGCTGTATTGAGAACATTTAGTCAGAGACTTTGCAGGGGATTTAATGATGCGGTGAATGGGTTTGTTGATGACGGTTGGTCGCTGATGGGTACTGATGGGGTGGAAGATGTGACTATAGCTGTAAACTCTTCTCCAAACAAATTTTTGGGGTCCAATTATAATGCTTCCATGTTCCCGGCCTTTGGAGGCGGGGTCTTGTGTGCCAAGGCATCGATGCTCCTGCAGAATGTTCCACCTGCTTTGCTTGTTCGTTTTTTGAGAGAGCATCGATCAGAATGGGCTGATTACGGGGTTGATGCATACTCTGCTGCATGCCTTAAAGCTAGTCCCTATGCAGTTCCCTGTGCAAGACCTGGTGGCTTCCCGAGCAGCCAGGTCATTTTACCTCTTGCTCATACTATTGAGCATGAAGAGTTCCTGGAGGTGGTTCGCATAGAGGGTCATGCATTTTCTCCTGAGGATGTGACGTTGGCACGTGATATGTATCTATTGCAGCTATGCAGTGGAGTTGATGAAAATGCAATTGGGGCATGTGCTCAACTTGTTTTTGCACCTATTGACGAGTCGTTTGCAGATGATGCTCTGTTGCTGCCATCTGGTTTTCGTGTCATTCCATTAGATCCTAAATCAGATGGTCCAGCTGCAACTCGAACACTGGATTTGGCATCAACAATGGAAGTAGGATCTGCTAATGCTCGTCCCGCCGGTGAAGCTGATTTGAATGGATACAACCTTCGGTCGGTCCTTACTATTGCTTTCCAATTTACCTTCGAAAATCATACGCGGGACAATGTTGCTGCAATGGCTCGGCAGTATGTGCGTAGTGTTGTTGGATCTGTTCAGAGAGTTGCCATGGCAATTGCTCCTTCCAGGCTTAGTACTCAACTTGGGCCAAAGTCACTTCCTGGTTCCCCTGAGGCCCTTACCTTAGCACGATGGATCAGTAGAAGCTACAGGATCCACACTGGCACAGAGCTTTTTAGAGCTGAGTCCACTGCAGGTGATGCAATCTTGAAGCAACTTTGGCACCATTCCGATGCAATCATGTGCTGTTCTGTGAAAACAAATGCATCTCCAGTGTTCACCTTTGCTAATCAAGCTGGGTTAGACATGCTTGAAACTACTCTTGTCGCACTTCAAGACATAATGCTGGATAAAGTGCTAGATGAATCTGGCAGGAAGATTCTTTGCTCTGAGTTCTCCAAGATAATGCAACAGGGATTTGCTTATCTACCAGCTGGGATATGTGTATCGAGTATGAATCGGCCAGTGTCTTATGAGCAGGCCATTGCATGGAAAGTCCTGAATGACGATGATTCTAATCACTGCCTAGCCTTCATGTTTATGAGTTGGTCTTTTGTATGA 2541 0.473 MALTLHKDSANNQMDSSKYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSHLVYENGYMKQQIQTASAGTTTDNSCESVVMSGQNQQQNPTPQHPNRDANNPAGLLAIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPTKVAEILKDRQSWYRDCRCVEVLSIVPTGNGGTIELMYMQTYAPTTLAAARDFWTLRYTTSLEDGSLVICERSLTSSTGGPTGPPSTTFVRAEMLPSGYLIRPCEGGGSIIHIVDHIDLDVWSVPEVLRPLYESSKILAQKLTIAALQHIRQIAQESSGEIQYGGGRQPAVLRTFSQRLCRGFNDAVNGFVDDGWSLMGTDGVEDVTIAVNSSPNKFLGSNYNASMFPAFGGGVLCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSAACLKASPYAVPCARPGGFPSSQVILPLAHTIEHEEFLEVVRIEGHAFSPEDVTLARDMYLLQLCSGVDENAIGACAQLVFAPIDESFADDALLLPSGFRVIPLDPKSDGPAATRTLDLASTMEVGSANARPAGEADLNGYNLRSVLTIAFQFTFENHTRDNVAAMARQYVRSVVGSVQRVAMAIAPSRLSTQLGPKSLPGSPEALTLARWISRSYRIHTGTELFRAESTAGDAILKQLWHHSDAIMCCSVKTNASPVFTFANQAGLDMLETTLVALQDIMLDKVLDESGRKILCSEFSKIMQQGFAYLPAGICVSSMNRPVSYEQAIAWKVLNDDDSNHCLAFMFMSWSFV 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01345 846 Pfam MEKHLA domain 701 845 IPR013978 -
Vimu2g01345 846 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 14 846 IPR044830 GO:0003700
Vimu2g01345 846 SMART START_1 166 376 IPR002913 GO:0008289
Vimu2g01345 846 MobiDBLite consensus disorder prediction 128 160 - -
Vimu2g01345 846 Pfam Homeodomain 18 76 IPR001356 GO:0003677
Vimu2g01345 846 CDD homeodomain 18 78 IPR001356 GO:0003677
Vimu2g01345 846 Coils Coil 87 107 - -
Vimu2g01345 846 CDD bZIP 70 109 - -
Vimu2g01345 846 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677
Vimu2g01345 846 SUPERFAMILY Bet v1-like 414 601 - -
Vimu2g01345 846 SMART HOX_1 15 81 IPR001356 GO:0003677
Vimu2g01345 846 FunFam homeobox-leucine zipper protein ATHB-15 202 383 - -
Vimu2g01345 846 FunFam Homeobox-leucine zipper protein REVOLUTA 18 73 - -
Vimu2g01345 846 Gene3D - 9 84 - -
Vimu2g01345 846 ProSiteProfiles START domain profile. 157 358 IPR002913 GO:0008289
Vimu2g01345 846 Pfam START domain 167 374 IPR002913 GO:0008289
Vimu2g01345 846 SUPERFAMILY Bet v1-like 167 378 - -
Vimu2g01345 846 Gene3D - 185 378 IPR023393 -
Vimu2g01345 846 MobiDBLite consensus disorder prediction 128 157 - -
Vimu2g01345 846 SUPERFAMILY Homeodomain-like 18 80 IPR009057 -
Vimu2g01345 846 CDD START_ArGLABRA2_like 161 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01345 Vimu-Chr2 9066064 9071187 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01345 5 846 Homeobox Transcription Factor Family AT2G34710 80.378 0.0 1407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vimu2g01345 START 6.7e-52 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01345 K09338 - gmx:100807428 1631.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01345 2 9066064 9071187 Vimu2g01345 2 9066064 9071187 ECH