LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu2g01336	ATGAGGTTTCTTTGTGTTGTGGTAACAGCCCTAGTGGTGCTTGGAGGGTTACCCTTTTCCTCAGATGCACAACTAGACCCCTACTTCTACCTGTGGACTTGTCCACCCGTGCGTCATGTTGTGTTCAAAGTGGTAGAGAGAGCTTCACAAAAGGATCCCCGTCTGCCTGCCAGTCTCGTCAGGCTTTTCTTTCACGACTGTTTTGTTCAAGGTTGTGATGCATCGATTTTGTTGAACAACACTGCAACGATAGTGAGTGAGCAACAAGCCCTGCCAAACAACAACTCCATAAGAGGTTTGGATGTGGTGAATGACATCAAGACAGCAGTGGAGAATGTTTGTCCCGGCGTTGTTTCTTGTGCAGATATTCTTACTATTGCAGCTGAAGTTTCTTCTATTCTGGCTGGTGGTCCTTTCATCAAATTTCCACTGGGAAGAAGGGACAGTTTAACAGCAAACAGAACACTTGCGAATCAAAACCTTCCTTCTCCTTTCTCCACACTCGATCAACTTAAAGGAGCATTTTCTGTTCAACGTCTTGACACTACTGATCTAGTTGCACTCTCAGGTGCTCATTCGTTTGGCAGAGCTCACTGCTTTTTCATTCTAACCCGATTGTACAACTTCAGTGGCACTGGCAGACCCGATCCAACTCTCGACCCTGCTTACGCACAACAATTGCGTAATATATGCCCTCAAGGTGGACCAAACAACTTGGTAAATTTTGACCCAACGACTCCTGATAGATTGGACAAAAACTATTACTCCAACCTTCAGGTTAAAAGGGGTTTGCTTCAGAGTGACCAAGAGTTGTTCTCAACACCCGGTGCTGACACCATCGCTCTTGTCAACAAGTTCAGTGCTGACCAAAATGCTTTCTTTAGCAGCTTTGCCAAATCAATGATAAAAATGGGAAATATCGGTGTTCTCACCGGGAACAGAGGAGAAATTAGAAAACAATGTAATTTTATTAACAAAAGATCTGTTGAAGCTGATATGGGAACTGTGGCCTCCGAATCAGAAGAGGGTATGAAAAAGACTTTCAATACGATGATAATAAAAGATGATCATGCCATCATAGTGGCATTCCGACTATCACAACTTGTCTCCACGGAACAATATCAGAGGAACAAAGCAAAACGTTCGGTGGTGGCAATCGGCGATGGTGATAGTGCAAGGTGGTGGCAGTGTGCAGTGGTGGCAGGGGCGACCTGGCTGAAGCACGATAGAGGCGACTTGACTGAATGA	1248	0.4503	MRFLCVVVTALVVLGGLPFSSDAQLDPYFYLWTCPPVRHVVFKVVERASQKDPRLPASLVRLFFHDCFVQGCDASILLNNTATIVSEQQALPNNNSIRGLDVVNDIKTAVENVCPGVVSCADILTIAAEVSSILAGGPFIKFPLGRRDSLTANRTLANQNLPSPFSTLDQLKGAFSVQRLDTTDLVALSGAHSFGRAHCFFILTRLYNFSGTGRPDPTLDPAYAQQLRNICPQGGPNNLVNFDPTTPDRLDKNYYSNLQVKRGLLQSDQELFSTPGADTIALVNKFSADQNAFFSSFAKSMIKMGNIGVLTGNRGEIRKQCNFINKRSVEADMGTVASESEEGMKKTFNTMIIKDDHAIIVAFRLSQLVSTEQYQRNKAKRSVVAIGDGDSARWWQCAVVAGATWLKHDRGDLTE	415

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu2g01336	415	ProSitePatterns	Peroxidases proximal heme-ligand signature.	184	194	IPR019793	-
	Vimu2g01336	415	PRINTS	Plant peroxidase signature	34	53	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Vimu2g01336	415	PRINTS	Plant peroxidase signature	98	111	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Vimu2g01336	415	PRINTS	Plant peroxidase signature	257	274	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Vimu2g01336	415	PRINTS	Plant peroxidase signature	241	256	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Vimu2g01336	415	PRINTS	Plant peroxidase signature	299	312	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Vimu2g01336	415	PRINTS	Plant peroxidase signature	183	195	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Vimu2g01336	415	PRINTS	Plant peroxidase signature	117	127	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Vimu2g01336	415	PRINTS	Plant peroxidase signature	136	151	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Vimu2g01336	415	PRINTS	Plant peroxidase signature	58	78	IPR000823	GO:0004601\|GO:0006979\|GO:0020037

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu2g01336	Vimu-Chr2	8956314	8960646	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu2g01336	3	338	Peroxidase	AT2G38380	54.810	3.71e-124	362

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu2g01336	K00430		-	vum:124829290	662.529

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