Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01336 ATGAGGTTTCTTTGTGTTGTGGTAACAGCCCTAGTGGTGCTTGGAGGGTTACCCTTTTCCTCAGATGCACAACTAGACCCCTACTTCTACCTGTGGACTTGTCCACCCGTGCGTCATGTTGTGTTCAAAGTGGTAGAGAGAGCTTCACAAAAGGATCCCCGTCTGCCTGCCAGTCTCGTCAGGCTTTTCTTTCACGACTGTTTTGTTCAAGGTTGTGATGCATCGATTTTGTTGAACAACACTGCAACGATAGTGAGTGAGCAACAAGCCCTGCCAAACAACAACTCCATAAGAGGTTTGGATGTGGTGAATGACATCAAGACAGCAGTGGAGAATGTTTGTCCCGGCGTTGTTTCTTGTGCAGATATTCTTACTATTGCAGCTGAAGTTTCTTCTATTCTGGCTGGTGGTCCTTTCATCAAATTTCCACTGGGAAGAAGGGACAGTTTAACAGCAAACAGAACACTTGCGAATCAAAACCTTCCTTCTCCTTTCTCCACACTCGATCAACTTAAAGGAGCATTTTCTGTTCAACGTCTTGACACTACTGATCTAGTTGCACTCTCAGGTGCTCATTCGTTTGGCAGAGCTCACTGCTTTTTCATTCTAACCCGATTGTACAACTTCAGTGGCACTGGCAGACCCGATCCAACTCTCGACCCTGCTTACGCACAACAATTGCGTAATATATGCCCTCAAGGTGGACCAAACAACTTGGTAAATTTTGACCCAACGACTCCTGATAGATTGGACAAAAACTATTACTCCAACCTTCAGGTTAAAAGGGGTTTGCTTCAGAGTGACCAAGAGTTGTTCTCAACACCCGGTGCTGACACCATCGCTCTTGTCAACAAGTTCAGTGCTGACCAAAATGCTTTCTTTAGCAGCTTTGCCAAATCAATGATAAAAATGGGAAATATCGGTGTTCTCACCGGGAACAGAGGAGAAATTAGAAAACAATGTAATTTTATTAACAAAAGATCTGTTGAAGCTGATATGGGAACTGTGGCCTCCGAATCAGAAGAGGGTATGAAAAAGACTTTCAATACGATGATAATAAAAGATGATCATGCCATCATAGTGGCATTCCGACTATCACAACTTGTCTCCACGGAACAATATCAGAGGAACAAAGCAAAACGTTCGGTGGTGGCAATCGGCGATGGTGATAGTGCAAGGTGGTGGCAGTGTGCAGTGGTGGCAGGGGCGACCTGGCTGAAGCACGATAGAGGCGACTTGACTGAATGA 1248 0.4503 MRFLCVVVTALVVLGGLPFSSDAQLDPYFYLWTCPPVRHVVFKVVERASQKDPRLPASLVRLFFHDCFVQGCDASILLNNTATIVSEQQALPNNNSIRGLDVVNDIKTAVENVCPGVVSCADILTIAAEVSSILAGGPFIKFPLGRRDSLTANRTLANQNLPSPFSTLDQLKGAFSVQRLDTTDLVALSGAHSFGRAHCFFILTRLYNFSGTGRPDPTLDPAYAQQLRNICPQGGPNNLVNFDPTTPDRLDKNYYSNLQVKRGLLQSDQELFSTPGADTIALVNKFSADQNAFFSSFAKSMIKMGNIGVLTGNRGEIRKQCNFINKRSVEADMGTVASESEEGMKKTFNTMIIKDDHAIIVAFRLSQLVSTEQYQRNKAKRSVVAIGDGDSARWWQCAVVAGATWLKHDRGDLTE 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01336 415 ProSitePatterns Peroxidases proximal heme-ligand signature. 184 194 IPR019793 -
Vimu2g01336 415 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu2g01336 415 PRINTS Plant peroxidase signature 98 111 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu2g01336 415 PRINTS Plant peroxidase signature 257 274 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu2g01336 415 PRINTS Plant peroxidase signature 241 256 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu2g01336 415 PRINTS Plant peroxidase signature 299 312 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu2g01336 415 PRINTS Plant peroxidase signature 183 195 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu2g01336 415 PRINTS Plant peroxidase signature 117 127 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu2g01336 415 PRINTS Plant peroxidase signature 136 151 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu2g01336 415 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu2g01336 415 FunFam Peroxidase 28 176 - -
Vimu2g01336 415 Gene3D Peroxidase, domain 2 162 304 - -
Vimu2g01336 415 FunFam Peroxidase 162 304 - -
Vimu2g01336 415 PRINTS Haem peroxidase superfamily signature 118 135 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu2g01336 415 PRINTS Haem peroxidase superfamily signature 136 148 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu2g01336 415 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu2g01336 415 PRINTS Haem peroxidase superfamily signature 243 258 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu2g01336 415 PRINTS Haem peroxidase superfamily signature 184 199 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu2g01336 415 CDD secretory_peroxidase 24 324 IPR033905 GO:0004601|GO:0042744
Vimu2g01336 415 Gene3D - 29 325 - -
Vimu2g01336 415 SUPERFAMILY Heme-dependent peroxidases 24 325 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vimu2g01336 415 ProSiteProfiles Plant heme peroxidase family profile. 24 325 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu2g01336 415 Pfam Peroxidase 43 288 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu2g01336 415 PANTHER PEROXIDASE 72-RELATED 22 323 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01336 Vimu-Chr2 8956314 8960646 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01336 3 338 Peroxidase AT2G38380 54.810 3.71e-124 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01336 K00430 - vum:124829290 662.529