Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01328 ATGGAGGATTCCGAGGGAGTCCTCAGCTTCGATTTCGAGGGCGGCCTCGACACCGTTCCCTCCGCCGCCGCCGCTCCTTCCGGTCCGCTCGTCCAACACGACTCCTCCGCTGCCGCTTCCGCCGTGTCCAACGGAGGCCCTCCCGCCCCGGCCCCCTCCGCAGCCGACCCCGCAGCCGTCAACGTTCCCGGCCGACGGAGCTTTCGGCAGACGGTATGCCGGCACTGGCTGCGTAGCCTGTGCATGAAGGGCGACGCTTGTGGGTTTCTGCACCAGTACGACAAGGCGCGGATGCCTGTTTGCCGATTCTTCAGGCTCTATGGAGAGTGTCGGGAACAGGATTGCGTGTATAAACACACGAACGAAGACATCAAGGAGTGTAACATGTACAAGTTGGGATTTTGTCCTAATGGGTCTGATTGCCGATATAGGCATGCTAAATCTCCTGGACCTCCACCTCCTGTTGAAGAGGTCCTTCAGAAGATCCAACATTTATATTCCTACAATTATAATTCATCTAACAAATTTTTCCAACAAAGGGGTTCTAGCTATGCCCAACAAGCTGAAAAATCCCAACTTCCTCAAGGAACAAACTCTACAAATCAAGTTGTGACTGGAAAACCATTGCCAGCAGAGTCAGGAAATGCCCAGCCACAGCAACAAGTTCAACAGTCTCAGCAGCAGGTCAGCCAGAGTCAAATGCAAAATGTTGCTAATGGCCAACCTAATCAAGCCAGTAGATCTGCTACCCCTTTACCTCAAGGAATATCTAGGTGTGTTCAGGGTCTTGTAGTTTTCAGTCAACCTATGTAA 813 0.5252 MEDSEGVLSFDFEGGLDTVPSAAAAPSGPLVQHDSSAAASAVSNGGPPAPAPSAADPAAVNVPGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKARMPVCRFFRLYGECREQDCVYKHTNEDIKECNMYKLGFCPNGSDCRYRHAKSPGPPPPVEEVLQKIQHLYSYNYNSSNKFFQQRGSSYAQQAEKSQLPQGTNSTNQVVTGKPLPAESGNAQPQQQVQQSQQQVSQSQMQNVANGQPNQASRSATPLPQGISRCVQGLVVFSQPM 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01328 270 MobiDBLite consensus disorder prediction 181 253 - -
Vimu2g01328 270 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 4-RELATED 10 237 IPR045348 GO:0003723|GO:0098789
Vimu2g01328 270 Gene3D - 62 125 - -
Vimu2g01328 270 MobiDBLite consensus disorder prediction 21 60 - -
Vimu2g01328 270 ProSiteProfiles Zinc finger C3H1-type profile. 67 94 IPR000571 GO:0046872
Vimu2g01328 270 FunFam Cleavage and polyadenylation specificity factor 30 kDa subunit 62 123 - -
Vimu2g01328 270 ProSiteProfiles Zinc finger C3H1-type profile. 121 148 IPR000571 GO:0046872
Vimu2g01328 270 SUPERFAMILY CCCH zinc finger 67 98 IPR036855 GO:0046872
Vimu2g01328 270 SMART c3hfinal6 95 121 IPR000571 GO:0046872
Vimu2g01328 270 SMART c3hfinal6 67 93 IPR000571 GO:0046872
Vimu2g01328 270 SMART c3hfinal6 123 147 IPR000571 GO:0046872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vimu2g01328 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01328 K14404 - gmx:100802826 441.039