Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01320 TTGATGAAGGAAGGTGGTGGGAGAAAGCAGGGTGCAGCTTCACCCTGTGCTGCATGCAAGCTTCTCAGAAGAAGGTGTGCTCAAGATTGTGTTTTTGCTCCATATTTTCCAGCAGATGAACCTCAAAAGTTTGCAAATGTGCACAAGGTCTTTGGTGCTAGCAATGTCAACAAAATGCTTCAGGACCTACCAATGCATCAAAGAGGGGATGCAGTGAGTAGCATGGTGTACGAGGCTAATGCCAGAGTCCGAGACCCAGTTTATGGGTGTGTTGGGGCCATCTCTTCTCTTCAGCAACAGATTGATGTACTACAGACCCAATTGGCCCTGGCCCAGGCTGAGGTGGCCCACCTCAGGGTCAGGCAAAATAGGTGTTTTTCCATTCATGGGCCTAGACCTACAAGCCCAACCAATACCTTGGACTCACATGTCAAGCCTATTTTTGACATGGACATGGTGGTGGACCAGGCCAGCTATGGGAGTTCAATGTGGTCATGA 498 0.492 MMKEGGGRKQGAASPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQDLPMHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLALAQAEVAHLRVRQNRCFSIHGPRPTSPTNTLDSHVKPIFDMDMVVDQASYGSSMWS 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01320 165 ProSiteProfiles LOB domain profile. 14 115 IPR004883 -
Vimu2g01320 165 Pfam Lateral organ boundaries (LOB) domain 15 112 IPR004883 -
Vimu2g01320 165 Coils Coil 94 121 - -
Vimu2g01320 165 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 12 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01320 Vimu-Chr2 8853412 8856069 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01320 2 165 AS2 family AT1G31320 72.316 2.54e-77 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vimu2g01320 LOB 1.6e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01320 - - gmx:100794219 309.301