Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01313 ATGGCTTATTCAGCCGAACCCTCATCTTCTTTGAGCTTCACATCATCTTCCCATTTATCAAATGGCTCAGTTAGTCACAACATTTGCTCTTCTTACGGCTCTGACCCTGGACCTAACCTTGAGGTTATCAGTTTGAGTAAGCTTAGCTCCAACTTGGAGCAGCTTTTGATTGAATCTGATTGTGATTACAGTGATGCTGACATCATTGTAGAAGGAATCCCAGTTAGTGTTCATCGATGTATTCTGGCCTCTAGAAGCAAGTTTTTCCATGAATTATTCAAGAGAGAGAAGGGGACATCAGAAAAAGAAGGGAAGTTGAAGTATAACATGAGTGATTTGTTGCCTTATGGCAAGGTTGGATATGAAGCCTTCCTCATATTCCTGGGTTATGTATATACTGGTAAACTCAAGCCCTCTCCAATGGAGGTGTCTACATGTGTTGACAATGTATGTGGCCATGATGCCTGTAGACCTGCAATTAACTTTGCTGTGGAGTTGATGTATGCCTCTTCCATTTTTCAAATACCAGAGTTGGTATCACTTTTCCAGCGACGTCTACTTAACTTTATAGGAAAGGCTCTTGTGGAAGATGTCATTCCAATCCTTACCGTTGCTTTCCATTGTCAATCGAGTCAACTTGTGACTCAATGTATTGATAGGGTGGCCAGATCAGACCTTGACCAGATTTCAATTGACAAAGAGCTTCCAAATGAGCTCTCAGGAAAAGTGAAATTGCTCCGCCGCAACCCTCAGCAAGACGTTGAAAATGATGCATCTGCATTGGATGCTTTGTCTCTGAAACGAATCACTAGAATACACAGGGCATTGGACTCCGATGATGTTGAGCTTGTTAAACTTCTTTTAAACGAGTCAGACATTACTTTAGACGAAGCTCATGCTCTTCATTATGCTGCAGCCTATTGTGACCCCAAGGTTGTTTCCGAGGTACTTAGTTTGGGACTGGCTAATGTTAATCTTCGGAATTCTCGAGGTTACACAGTGCTTCATATTGCTGCCATGCGGAAAGAAGCTTCTATTATAGTATCGCTGCTTACAAAAGGGGCTTGTGCATCAGATGTGACTTTCGACGGTCAGAGTGCTGTTAGTATTTGTAGAAGGTTGACGAGGCCAAAGGATTATCATGCGAAAACAGAACAGGGGAAAGAAACAAACAATGATCGGATATGCATCGATGTTCTCGAAAGAGAAATGCGGAGGAATCCACTGGCCGGAGAGGCCGGTATCTCTTCCCATGCCATGGCTGATGACCTCCACATGAAACTACTATACCTTGAAAACAGAGTGGCATTTGCAAGGCTTTTCTTCCCTTCAGAGGCGAAACTAGCCATGGACATTGCGCATGCTGAGACAACATCTGAGTTTGCTGGTCTCTCTGCATCAAACTCAAAAAATTCAAACGGCAACTTGAGGGAGGTTGATCTGAATGAGACTCCCATAGTGCAAAATAAAAGACTTCTTTCTAGAATGGAGGCCCTTATGAAGACAGTGGAAATGGGGCGGCGGTACTTCCCTCACTGCTCGGAAGTGCTGGACAAGTTCATGGAGGATGACCTACCAGACTTGTTTTATCTTGAAAAGGGTACTCAAGAAGAGCAGAGAATAAAAAGAACACGGTTCATGGAGCTGAAAGATGATGTCCACAAGGCCTTCAGCAAGGACAAGGCCGAGTTTAGCCGCTCTGGCATTTCATCTTCATCATCTTCATCTTCCCTCAAAGATTCTGTTGTACATTACAGAGCTAGGAAAGTGTAA 1773 0.4349 MAYSAEPSSSLSFTSSSHLSNGSVSHNICSSYGSDPGPNLEVISLSKLSSNLEQLLIESDCDYSDADIIVEGIPVSVHRCILASRSKFFHELFKREKGTSEKEGKLKYNMSDLLPYGKVGYEAFLIFLGYVYTGKLKPSPMEVSTCVDNVCGHDACRPAINFAVELMYASSIFQIPELVSLFQRRLLNFIGKALVEDVIPILTVAFHCQSSQLVTQCIDRVARSDLDQISIDKELPNELSGKVKLLRRNPQQDVENDASALDALSLKRITRIHRALDSDDVELVKLLLNESDITLDEAHALHYAAAYCDPKVVSEVLSLGLANVNLRNSRGYTVLHIAAMRKEASIIVSLLTKGACASDVTFDGQSAVSICRRLTRPKDYHAKTEQGKETNNDRICIDVLEREMRRNPLAGEAGISSHAMADDLHMKLLYLENRVAFARLFFPSEAKLAMDIAHAETTSEFAGLSASNSKNSNGNLREVDLNETPIVQNKRLLSRMEALMKTVEMGRRYFPHCSEVLDKFMEDDLPDLFYLEKGTQEEQRIKRTRFMELKDDVHKAFSKDKAEFSRSGISSSSSSSSLKDSVVHYRARKV 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01313 590 SMART ANK_2a 296 326 IPR002110 GO:0005515
Vimu2g01313 590 SMART ANK_2a 267 295 IPR002110 GO:0005515
Vimu2g01313 590 SMART ANK_2a 330 362 IPR002110 GO:0005515
Vimu2g01313 590 Gene3D - 264 404 IPR036770 -
Vimu2g01313 590 MobiDBLite consensus disorder prediction 558 590 - -
Vimu2g01313 590 ProSiteProfiles Ankyrin repeat region circular profile. 330 355 - -
Vimu2g01313 590 ProSiteProfiles Ankyrin repeat profile. 330 355 IPR002110 GO:0005515
Vimu2g01313 590 Pfam NPR1/NIM1 like defence protein C terminal 372 576 IPR021094 -
Vimu2g01313 590 Pfam Ankyrin repeats (3 copies) 273 355 IPR002110 GO:0005515
Vimu2g01313 590 Pfam BTB/POZ domain 62 180 IPR000210 GO:0005515
Vimu2g01313 590 MobiDBLite consensus disorder prediction 564 581 - -
Vimu2g01313 590 ProSiteProfiles BTB domain profile. 64 140 IPR000210 GO:0005515
Vimu2g01313 590 FunFam regulatory protein NPR3-like 264 404 - -
Vimu2g01313 590 PANTHER REGULATORY PROTEIN NPR3 10 581 IPR044292 GO:0009862|GO:2000022|GO:2000031
Vimu2g01313 590 SUPERFAMILY POZ domain 52 189 IPR011333 -
Vimu2g01313 590 CDD BTB_POZ_NPR_plant 47 190 - -
Vimu2g01313 590 SMART BTB_4 64 190 IPR000210 GO:0005515
Vimu2g01313 590 FunFam Regulatory protein NPR3 38 222 - -
Vimu2g01313 590 Gene3D Potassium Channel Kv1.1; Chain A 39 222 IPR011333 -
Vimu2g01313 590 SUPERFAMILY Ankyrin repeat 256 373 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01313 Vimu-Chr2 8778554 8781044 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vimu2g01313 NPR1_like_C 9.9e-98 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01313 K14508 - gmx:100217338 1061.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01313 2 8778554 8781044 Vimu2g01313 2 8778554 8781044 ECH