Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01310 ATGGAAACTGGTGCTGGCGGTAGCCAAGCCCAAAGAAGCGGTCACACCGCAAGAGGAATTCCGCCACCGCAACCGCCTGAGGAACCGAATCTGCGGCCAGAATGCCGAGGACCAAGTGGGACTGAGCCGGACCTCATTCTGCAACCTGAATGGCGCCGTCGAAGACCAAGCGCTCCTCCTTCCGAACCTTCCAACCGTGGCAGCGAAGAGGAAATTCTTCTCCAACCAGAATGGAGGCGCTCGAAGCCAAGCGCGAGTGCCAGTGCCAGTCCGAGTACTAGTGTTTGGGAACCCGAATGGAGACGATCGAGAACAAGTTCAACGGCATTTCCGTGGGACCAGAATTACAGTGTTCGCAAACCTAGTGCGTCCAGTGGCGTTGAAAGACGCGGTGACCCTAACGACCTTTGGCGAGCTGCTCCGACTACAGACTGCCATAGGGATCGTGGGAACTACCGAAAGATTCCTCTCGTGGCAGATTCCGTTGTTCCCAAGCTGGAAAAACTACTAATATCAAAACAGTTACCTACATCAACTTGTACTCATGATAAAAAGGATAGAATATCACCTATTCAGAGACCTGATAATGGTGGCACGATAGCAATTCTAACTAGCAGACTCCGTGTCAACCATTTCCCTGTTAAGTTTGATCCAGAGCGTACCATAATGCATTATAGTGTTGGTGTCAAGCCTAAGGTTTCTTCAAAATTTGGTCAGCCTCAGAAATTATCAAAGTCTGATCTATCCATGATCCGAGAGAAACTGTTTTCTGACGATCCTGAGAGGTTGCCCTTGGAGATGACTGCACATGACGGTGCAAAAAATATTTATAGTGCAGTACAGTTACCAGAAGAGACATTTACTGTGGAGATATCTGATGGAGAGGACGAAAAGATCATTTCATATAGTGTTACATTAACTCTTGTTAATAAACTCAGGCTTTGCAAGCTAATGGACTATCTCAGTGGACATAACCTCTCCAATCCTAGGGATATTTTACAAGGTTTGGATGTGGTTGTGAAAGAGAATCCTGCTAGACGAACTGTTTCTGTAGGAGGACGCTATTATCCCACAAATCCACCTGTAGTAATGAGGGATCTTCACCATGGGATAATGGCTGTTGGGGGATTTCAGCATAGTTTAAAGCCTACAGCTCAGGGTCTGTCCTTATGTGTAGACTACTCAGTTTTGGCTTTTCGGAAGGGAATGCCAGTCTTGGATTTCTTGCATGAGTGTATTGATAACTTTAAAGTGGATGAATTCGAAAAATTTAGGAAATGTGTTGAGGACGCACTTGTTGGATTGAAAGTCAGCGTGACTCATCGTAAAAGCAATCGGAAATACATTATTTCAAGATTAACTCCTATGATTACAAGGTATGTCACTTTTCCCATTGACAATACCGGTGGATGGAATCGCCCAAAGGATGTTAGTCTTCTTTCCTTTTATAAAGACAAATATGGCAAGGAAATTATGTACAAAGATATTCCTTGTCTAGATTTAGGTAAAGACAAGAAGAACTATGTACCCATGGAATTCTGTGTTCTAGTTGAGGGCCAAAGATATCCCAAAGAGCGTCTGGGTAGTATTTCTGCAAATACATTGAAAACAATGTCACTTGCTCACCCAAATGAGAGGGAGTGTGCAATACATAAGATGGTGCAGTCTAGTGATGGACCTTGCAGGGGTGGTTTTACTCAAAATTTTGGAATGAGTGTCAACACAACTATGACAACTATTGTAGGACGTGTACTTGGCCCTCCAGAATTAAAGTTAGGTGATCCAAATGGAGAGACCATTAAATTAACAGTGGATCTGGAGAAATGTCACTGGAATCTTGCTGGAAGATCAATGGTGGAAGGTAAACCAGTTGAGCATTGGGGCATTATTGATTTCACTAGTCTTGGGCCATTTAGGTACAAATTAAGAGGCAAGGATTTCATTCAAAAGCTTATAGGAAAATACAAGAAATTGGGTATATACATGCAGGAGCCCATTTGGTATGAAGAATCTTCAATGAAGATACTTGCGAGTTATGATTTGCTATCTGAGTTACTTGAGAAAATTAACAACATTTGTAAATATAACCAAGTACACCTGCAATTTCTTATGTGTGTAATGGCTAAAAAAAGTTCCGGTTACAAGTACCTCAAATGGATTTCTGAGACCAAACTTGGGATAGTAACACAATGCTGCTTGTCTAACGGTGCTAATGAAGCAGAGGACAAATTTTATACCAATCTGGCTCTCAAGATCAATGCCAAACTTGGAGGCAGTAACGTGGAGCTCAGTAATGGGCTCCCTTACTTTGTGGGTGAAGGACATGTGATGTTTTTAGGGGCTGATGTCAACCATCCTGGTTATCAAGACACCAGGAGTCCATCAATTGCTGCTGTGGTCGCTACTATTAACTGGCCTGCTGCAAATCGTTATGCAGCACGTGTATGCCCACAATACAATCGAAGTGAGAAAATACTGAGCTTTGGGGATGTTTGCCTTGAGCTTGTTTCATGCTATAGGAGTATGAATGGAGTTAGGCCCGAAAGAATTGTTATTTTTCGTGATGGGGTGAGTGAGTACCAGTTTGACATGGTTCTTAACGAAGAACTGCTTGATTTGAAGAGAGCATTTGAAAGAGTAAACTACTTTCCAACAATCACTCTTATTGTGGCACAAAAACGACATCAAACTCGATTTTTTCCAGAGGGCTGGAGGGATGGATCTTCTAGTGGCAATATATTACCAGGAACAGTTGTGGACACAAAAGTTATACACCCTTTTGAGTTTGACTTCTACCTTTGTAGTTACTATGGAAACCTAGGTACAAGCAAGCCTACTCATTACCATGTTTTATGGGACGAGCACAAGTTTACATCTGATGAATTGCAGAAGCTCATATACGAGATGTGCTTCACCTTTGCCAAGTGCACTAAACCTGTATCTTTAGTTCCTCCTGTTTATTATGCTGACCTTGCTGCTTATAGAGGACGATTATACCATGAAGCAAGGATTGGGATGCAATCTCCAAAGCCAACAAAAGATGCTTCCTCACTTTCACGAACCACTTCATTTGAACAGGGATTTTACACACTGCATGCTGACCTACAAAACATAATGTTCTTTATCTAA 3129 0.4254 METGAGGSQAQRSGHTARGIPPPQPPEEPNLRPECRGPSGTEPDLILQPEWRRRRPSAPPSEPSNRGSEEEILLQPEWRRSKPSASASASPSTSVWEPEWRRSRTSSTAFPWDQNYSVRKPSASSGVERRGDPNDLWRAAPTTDCHRDRGNYRKIPLVADSVVPKLEKLLISKQLPTSTCTHDKKDRISPIQRPDNGGTIAILTSRLRVNHFPVKFDPERTIMHYSVGVKPKVSSKFGQPQKLSKSDLSMIREKLFSDDPERLPLEMTAHDGAKNIYSAVQLPEETFTVEISDGEDEKIISYSVTLTLVNKLRLCKLMDYLSGHNLSNPRDILQGLDVVVKENPARRTVSVGGRYYPTNPPVVMRDLHHGIMAVGGFQHSLKPTAQGLSLCVDYSVLAFRKGMPVLDFLHECIDNFKVDEFEKFRKCVEDALVGLKVSVTHRKSNRKYIISRLTPMITRYVTFPIDNTGGWNRPKDVSLLSFYKDKYGKEIMYKDIPCLDLGKDKKNYVPMEFCVLVEGQRYPKERLGSISANTLKTMSLAHPNERECAIHKMVQSSDGPCRGGFTQNFGMSVNTTMTTIVGRVLGPPELKLGDPNGETIKLTVDLEKCHWNLAGRSMVEGKPVEHWGIIDFTSLGPFRYKLRGKDFIQKLIGKYKKLGIYMQEPIWYEESSMKILASYDLLSELLEKINNICKYNQVHLQFLMCVMAKKSSGYKYLKWISETKLGIVTQCCLSNGANEAEDKFYTNLALKINAKLGGSNVELSNGLPYFVGEGHVMFLGADVNHPGYQDTRSPSIAAVVATINWPAANRYAARVCPQYNRSEKILSFGDVCLELVSCYRSMNGVRPERIVIFRDGVSEYQFDMVLNEELLDLKRAFERVNYFPTITLIVAQKRHQTRFFPEGWRDGSSSGNILPGTVVDTKVIHPFEFDFYLCSYYGNLGTSKPTHYHVLWDEHKFTSDELQKLIYEMCFTFAKCTKPVSLVPPVYYADLAAYRGRLYHEARIGMQSPKPTKDASSLSRTTSFEQGFYTLHADLQNIMFFI 1042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01310 1042 SMART DUF1785_2 349 402 IPR014811 -
Vimu2g01310 1042 MobiDBLite consensus disorder prediction 1 15 - -
Vimu2g01310 1042 CDD Piwi_ago-like 565 999 IPR045246 -
Vimu2g01310 1042 MobiDBLite consensus disorder prediction 81 122 - -
Vimu2g01310 1042 FunFam Protein argonaute 7 397 522 - -
Vimu2g01310 1042 SMART PAZ_2_a_3 403 540 IPR003100 GO:0005515
Vimu2g01310 1042 Pfam PAZ domain 407 533 IPR003100 GO:0005515
Vimu2g01310 1042 CDD PAZ_argonaute_like 403 517 - -
Vimu2g01310 1042 MobiDBLite consensus disorder prediction 1 142 - -
Vimu2g01310 1042 Pfam Argonaute linker 1 domain 353 401 IPR014811 -
Vimu2g01310 1042 ProSiteProfiles PAZ domain profile. 403 518 IPR003100 GO:0005515
Vimu2g01310 1042 Pfam Piwi domain 703 997 IPR003165 GO:0003676
Vimu2g01310 1042 SUPERFAMILY Ribonuclease H-like 689 1001 IPR012337 -
Vimu2g01310 1042 SMART Piwi_a_2 702 1000 IPR003165 GO:0003676
Vimu2g01310 1042 ProSiteProfiles Piwi domain profile. 702 1001 IPR003165 GO:0003676
Vimu2g01310 1042 Pfam N-terminal domain of argonaute 206 340 IPR032474 -
Vimu2g01310 1042 SUPERFAMILY PAZ domain 398 556 IPR036085 GO:0005515
Vimu2g01310 1042 Gene3D - 584 764 - -
Vimu2g01310 1042 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 206 1002 - -
Vimu2g01310 1042 Gene3D paz domain 397 522 - -
Vimu2g01310 1042 Gene3D - 769 1042 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01310 Vimu-Chr2 8755043 8759358 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01310 207 1001 Eukaryotic Initiation Factors Gene Family AT1G48410 35.894 9.48e-146 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01310 K11593 - gmx:100783571 1778.84