Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01308 ATGGGGGATCAGGGTGTTTTAGGTGTTAACGTTGGAAGAGAGGAGGAGGAAGATGAGTTTTGCAGTTGTTGTGGAGATGAAGACGAGGAAGCGTGGAAAGAGACTGAGGAAGCTGTGGTGGGAGGGTTGAAGGACGAGCTTGATGAATTTTCAGTGAAAATGTTCTTCAAGGGTTTGTCAATGGCTGGGGTTAAAAATTCAAGTTCTGGGTTTTCTGGAATTGGAGTTGTAATGGAAAGGTCACCAGGGCTTCCTGCTATAAGGGTGCAGAAAAAACTTGACTTTTATGCGGAGGAGTCTGTGGTTGACTCTTTGGCACTCTTGGATGGTTTGCTGGAAGCTGTGCGGAAAAAGATCCGCAGGGTTTATGCTTTCACAGATTCCGAGTTGTTGCATGATCAGATAACATTTGGGAAGAAAATGGACATGCCTCTTTTGATGGCATTGAGAGAAAGGATTCTAGAACTTGGCAATAATTTTGAAGATTTTGTTTTAAAGCTTATACCGTCTACTGATCTTGAGCAGCCACTGCATTTGGCCAAAGTAGCTATTGGACTAGTCACTTTCCCCATAAATGGTGAGAGATTGCTTAAGAACTGTTCTATTTGCTGTGATGACAAGCCAGTGCTAATTATGATTACCCTGAAATGTTCGCACACATTCTGTTCACATTGCTTGAGGGCCTATGCCGATGGTAAAGTACAATCATCTCAAGTTCCTATAAAATGCCCTCAACCAGGGTGCAAGTATTGCATCTCTGCAACTGAGTGCAGGTCTTTTCTTCCATTCACCTCATTTGAATCACTGGAGAAAGCTCTTTCCCAAGCCAGTATTGACAATTCAGATAGAATTTATTGCCCATTTCCAAATTGTTCTGTTCTCCTTGATTCTCATGAATGTTTATCAGCTAGGGCAAGTTCATCAAGTCAGTCTGACAATTCTTGTATCGAGTGTCCTGTTTGTAAGAGGTTCATCTGCGTGGACTGTAAGGTTCCTTGGCATTCTTCTATGAATTGTGTAGAATTCCAGAATCTGCCAGAGGACGAGAGGGATGCTTCTGACATATCCTTGAACCGTCTTGCTCAAAATAAGAGGTGGAAGCGTTGTCAGCAATGTCGTACAGTGATTGAACTTACTCAAGGCTGTTACCACATGACATGCTGGTGTGGTCATGAGTTCTGCTATTCTTGTGGTGCGGAATACCGAGAAGGGCAACAAACATGCCAATGTGCATATTGGGATGAAAATAACTCAGAAAACTCAGTGGCACACTCTCTTCAAGAATCAGAACAATGGGCATGGGAGACATTCAACTCTCTCTCCATGATCGTGGATGCATACTCAGACCAGGAAAGATCACAGCTTGCGCTGATTCAGAGGTTTCTGGCCGGCGGTTTCAGTCTCAGTGACCACAATCCTTACCAGTCTCCTCCTCGCTGTACAGATTCCTATGTAGACCCCATGAAGGATCTACATCAACTTCCATGGCTAGAGAGATTTGTGTCTGTGATAAGTGACAACTACTATGAAGATTACATTCAATGA 1545 0.4343 MGDQGVLGVNVGREEEEDEFCSCCGDEDEEAWKETEEAVVGGLKDELDEFSVKMFFKGLSMAGVKNSSSGFSGIGVVMERSPGLPAIRVQKKLDFYAEESVVDSLALLDGLLEAVRKKIRRVYAFTDSELLHDQITFGKKMDMPLLMALRERILELGNNFEDFVLKLIPSTDLEQPLHLAKVAIGLVTFPINGERLLKNCSICCDDKPVLIMITLKCSHTFCSHCLRAYADGKVQSSQVPIKCPQPGCKYCISATECRSFLPFTSFESLEKALSQASIDNSDRIYCPFPNCSVLLDSHECLSARASSSSQSDNSCIECPVCKRFICVDCKVPWHSSMNCVEFQNLPEDERDASDISLNRLAQNKRWKRCQQCRTVIELTQGCYHMTCWCGHEFCYSCGAEYREGQQTCQCAYWDENNSENSVAHSLQESEQWAWETFNSLSMIVDAYSDQERSQLALIQRFLAGGFSLSDHNPYQSPPRCTDSYVDPMKDLHQLPWLERFVSVISDNYYEDYIQ 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01308 514 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 129 461 IPR031127 GO:0004842|GO:0016567
Vimu2g01308 514 Gene3D - 54 186 IPR036397 GO:0003676
Vimu2g01308 514 Pfam IBR domain, a half RING-finger domain 272 339 IPR002867 GO:0008270
Vimu2g01308 514 Pfam IBR domain, a half RING-finger domain 356 408 IPR002867 GO:0008270
Vimu2g01308 514 CDD Rcat_RBR_unk 365 401 - -
Vimu2g01308 514 SMART ibrneu5 267 339 IPR002867 GO:0008270
Vimu2g01308 514 SMART ibrneu5 349 408 IPR002867 GO:0008270
Vimu2g01308 514 FunFam RBR-type E3 ubiquitin transferase 337 462 - -
Vimu2g01308 514 SUPERFAMILY RING/U-box 352 416 - -
Vimu2g01308 514 CDD BRcat_RBR_unk 281 342 - -
Vimu2g01308 514 FunFam RBR-type E3 ubiquitin transferase 52 187 - -
Vimu2g01308 514 FunFam RBR-type E3 ubiquitin transferase 196 280 - -
Vimu2g01308 514 Pfam Reverse transcriptase-like 63 169 IPR002156 GO:0003676|GO:0004523
Vimu2g01308 514 SUPERFAMILY RING/U-box 199 278 - -
Vimu2g01308 514 ProSitePatterns Zinc finger RING-type signature. 217 226 IPR017907 -
Vimu2g01308 514 SMART ring_2 200 251 IPR001841 -
Vimu2g01308 514 SMART ring_2 369 410 IPR001841 -
Vimu2g01308 514 ProSiteProfiles TRIAD supradomain profile. 196 414 IPR044066 -
Vimu2g01308 514 ProSiteProfiles Zinc finger RING-type profile. 200 244 IPR001841 -
Vimu2g01308 514 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 197 281 IPR013083 -
Vimu2g01308 514 Gene3D - 338 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01308 Vimu-Chr2 8740061 8745554 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01308 51 399 C3H Transcription Factor Family AT2G19610 25.905 4.72e-30 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01308 - - gmx:100783040 961.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01308 2 8740061 8745554 Vimu2g01308 2 8740061 8745554 ECH