Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01301 ATGACTGACGATACCATGTGTTCTCCAAGCGACAAGGACTTGTCGCTGAGTCCTAATCTTGATATCACGGTCTTGAAGAACCTTAGGCTCTTGATCATTCTTGTATTGACACTCCTGTTAATGCTTGTTAAATGCGTTCAAAGGGGTTCTCCCAGTTTTGAGAAAATGGCACAATTTCATTGGACTGGTGTTTTTTTGGCAATTCTGCATTCATATGAATTTCTTATAGATGATGGCTCTCCGAACAGTGAGCAACTCCTTGACATAGTGGATGAGGGCAACGAGCTTGACAATGAATGTGGACAATTGTTTGAGATTGATGAAAATGGGCATGAAAATGGGAGGGATGAAACCAGAGTAGTTGATAGTCACAGTGGAGAATCTCAAGGGAAAGACTGTCCCCCACCAGTTGTGGGAATGGAGTTTGATACCTATGATGATGCCTACAACTATTACAATACCTATGCGAAGGAAATTGGATTTGCAACTCGAGTTAAATCTTCTTGGACGAAACGTAACAGCAAAGAGAAGCGTGGTGCGGTTCTGTGCTGCAACTGTGAGGGTTTCAAAACAACCAAAGATGCAAATAGTCACAGGAAAGAAACAAGAACGGGCTGTCTAGCAATGATTAGATTGAGATTAGTGGAATCTAACAGGTGGAGAGTCGATGAAGTCAAGCTTGAGCATAACCATTCATTTGATCCTGAAAGAGCACAAAACTCTAAATCACATAAGAGGATGGACACTAGGTCAAAAAGAAAAGTTGAGCCGACTCTAGACGTTGAATTTCAGGAGTACGAGGCATTTCAAATTGCGCTTACTAAAGTCATATATGACTCTAAAACGGTAGACGAGTTTGAAAGGGCTTGGGATGATCTAACCCAGCATTTTGGAATAAGAAATCACGAAAAGATCCTAACCTTGCATGAGGAACGAGAGCATTGGGCTCCAGTGTACTCCAAAGACACATTTTTTGCTGGAATATCTGATTATGAAAAGGGTGAGTCTGTGGTTCCCTTTTTCAAGGGTCATGTGCATCAACAAACTTCTTTGAAAGAATTTTTTGAGATTTATGAATTAGTTCAGCAGAAAAAACATAAAACCGAAGTTCTTGATGATCTTGAGTCATGCGATTTGAGCTCAATACTGAAGACAAGATGCTACTACGAGTTGCAAATCTCTAAATTGTACACAAATGCTGTATTTAGGAAGTTTCAAGATGAGGTGATGATGATGTCTTCTTGTTTCAGCATCACGCAGACTCAAACTAGTGGCTCTACGGTGACGTACATGGTAAAAGAACGAGAAGTGGAAGACCCTGCAACAGATTCCAGGCATTTTGAAGTCATGTATGATAAAGCCGGAACAGAAGTGCGCTGCATTTGTAGTTGCTTTAATTTCAAGGGCTACCTGTGCAGACATGCCTTGTATATCCTTAATTTCAATGGTGTGGAGGAAATTCCATGTCAATACATTTTGTCAAGATGGAGGAAAGATTTTAAGCGTTTGTATGTACCTCATCTTAGTGCTGATAATGTTGATATTAGCAACCCAGTTCAGTGTTTTGATCATTTGTACAAACGTGCCATGCGAGTTGTTGAAGAGGGGATGATATCCCAAGATCATTATATGGTTTCTTGGCAAGCATTTAAAGAATCTCTGAATAAGATTCGCCTTGTAGCAGACAAGATTGAATAA 1698 0.4016 MTDDTMCSPSDKDLSLSPNLDITVLKNLRLLIILVLTLLLMLVKCVQRGSPSFEKMAQFHWTGVFLAILHSYEFLIDDGSPNSEQLLDIVDEGNELDNECGQLFEIDENGHENGRDETRVVDSHSGESQGKDCPPPVVGMEFDTYDDAYNYYNTYAKEIGFATRVKSSWTKRNSKEKRGAVLCCNCEGFKTTKDANSHRKETRTGCLAMIRLRLVESNRWRVDEVKLEHNHSFDPERAQNSKSHKRMDTRSKRKVEPTLDVEFQEYEAFQIALTKVIYDSKTVDEFERAWDDLTQHFGIRNHEKILTLHEEREHWAPVYSKDTFFAGISDYEKGESVVPFFKGHVHQQTSLKEFFEIYELVQQKKHKTEVLDDLESCDLSSILKTRCYYELQISKLYTNAVFRKFQDEVMMMSSCFSITQTQTSGSTVTYMVKEREVEDPATDSRHFEVMYDKAGTEVRCICSCFNFKGYLCRHALYILNFNGVEEIPCQYILSRWRKDFKRLYVPHLSADNVDISNPVQCFDHLYKRAMRVVEEGMISQDHYMVSWQAFKESLNKIRLVADKIE 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01301 565 SMART 26again6 458 485 IPR006564 GO:0008270
Vimu2g01301 565 ProSiteProfiles Zinc finger SWIM-type profile. 447 483 IPR007527 GO:0008270
Vimu2g01301 565 MobiDBLite consensus disorder prediction 108 126 - -
Vimu2g01301 565 MobiDBLite consensus disorder prediction 108 136 - -
Vimu2g01301 565 Pfam FAR1 DNA-binding domain 150 234 IPR004330 -
Vimu2g01301 565 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 256 558 IPR031052 GO:0006355
Vimu2g01301 565 MobiDBLite consensus disorder prediction 231 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01301 Vimu-Chr2 8676132 8680377 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vimu2g01301 FAR1 7.3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01301 K17604 - gmx:100796448 588.571