Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01300 ATGGAAGACACCTCTCTCTGCTGTGAACAATTGCCGGATGGGGAATGCATTGAGGTTCAGAAAGACGAAGATGGCGCGCTGATTGAATTGGATTGTCAGAATGGTTTTCCTGAGGGGAGAAAGGAATTTGTTGCACCTGCTGTTGGAATGGAGTTTGAGTCATACGATGATGCTTACAATTATTATATTTGCTATGCCAAGGAGGTGGGGTTTCGTGTACGGGTGAAGAATTCGTGGTTCAAGCGGAATAGCAGAGAGAAGTACGGTGCAGTGCTTTGCTGTAGCAGCCAGGGTTTCAAGAGAATAAAGGATGTTAATCATCTGAGGAAGGAGACGAGAACTGGTTGTCCTGCAATGATAAGGATGAGATTGGTGGAGTCACAGAGATGGCGGGTGCTTGAAGTTATGCTTGAACATAACCACATGTTGGGTGCTAAGATACAGAGGTTGGTTAAGAAGATGGGAACTGGGTTGAAGAGGAAGTCCTTGCCTAGCTCTGATGCCGAGGGGCAGACGATTAAGTTATATCGTGCACTTGTGATTGACGCGGGAGGTGATGGAATTTCAAACTCCACTGCAAGAGAAGACAGAAGTTTCTGTGAGTTTTCTAATAAGTTGAACCTTAGAAAAGGTGACTCACAGGCCATTTATAATTTCCTCTGCCGAATGCAATTGACTAATCCAAACTTCTTTTACTTGATGGATTTCAATGACGAAGGGCATTTGAGGAATGCATTTTGGGTTGATGCTAGATCCAGGGCTGCGTGTGGTTATTTTGGCGATGTTATTTATTTTGACAACAGTTATTTGTCAAACAAATATGAAATCCAGTTGGTGACTTTTGTTGGAATAAATCACCATGGTCATTCGGTCTTATTAGGATGTGGCCTCCTTGCAAGTGAAACAACAGAGTCTTATGTATGGTTGTTTAGGACATGGGTTAAATGTATGGCGGGATGTTCTCCCCAAACTATTATTACTGACAGGTGCAAGGCTTTGCAGAGAGCAATCATAGAAGTTTTTCCTAGATGTCGTCATTGTTTTGGCTTGTCATTAATTATGAAAAAGATACCAGAAAAATTGGGAGGTTTGCACAACTATGATGCACTCAGGAAAGCACTGATTAAAGCAGTTTATGAAACATTGAAAGTGATTGAATTTGAAGCAGCATGGGGATTTATGATTCAACATTTTGGAGTTAGTGATCACGAGTGGCTTCGTTCTCTGTATGAAGATCGAGTTCATTGGGCTCCGGTATTTTTGAAGGACACATTTTTTGCTGGAATGTCTGCAGCTCGCCCTGGTGAGAACATTACTCCTTTTTTTGATAGATACGTGCACAAACAGACTCCTCTGAAGGAGTTTCTTGATAAATATGAATTAGCTCTTCACAAGAAGTACAAAGAAGAGTCTTTTGCAGATATTCAATCAAGGAGCTCAAGCCCCTTGCTGAAAACTAGATGTTCCTTTGAATTGCAGCTCTCCAGATTGTACACTAGAGAAATGTTCATGAAATTCCAGTCAGAAGTGGAAGAAGTATATTCTTGTTTTGGTACAACACAGTTACATGTGGATGGTCCCATCATAATTTTCTTGGTCAAGGAGCGTGTTTTGATTGAGGGAAACCGACGGGAGATACGGGATTTTGAAGTTTTGTACAGTAGGACCGTAGGTGAAGTTCGTTGCATCTGTAGTTGCTTTAATTTTTATGGATATCTTTGTCGACATGCACTGTGTGTGCTCAATTTTAATGGGGTTGAAGAGATACCTCACAGATACATTCTTTCGCGATGGAAGAAAGATTACAAGCGTCTTTATGTTCCTGATCACAGCTCTGGTACCGCTGATGATACTGACCGCATTCAATGGTCTAATCAGTTATTTAGAAGTGCCTTGCAAGTTGTTGAGGAGGGTATACTTTCTCTAGATCATTACAATGTAGCGTTACAATCTTTAGAAGAATCATTGAGTAAGGTTCATGATGTAGAGCAGAGACAAGAGTGA 2004 0.4122 MEDTSLCCEQLPDGECIEVQKDEDGALIELDCQNGFPEGRKEFVAPAVGMEFESYDDAYNYYICYAKEVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVNHLRKETRTGCPAMIRMRLVESQRWRVLEVMLEHNHMLGAKIQRLVKKMGTGLKRKSLPSSDAEGQTIKLYRALVIDAGGDGISNSTAREDRSFCEFSNKLNLRKGDSQAIYNFLCRMQLTNPNFFYLMDFNDEGHLRNAFWVDARSRAACGYFGDVIYFDNSYLSNKYEIQLVTFVGINHHGHSVLLGCGLLASETTESYVWLFRTWVKCMAGCSPQTIITDRCKALQRAIIEVFPRCRHCFGLSLIMKKIPEKLGGLHNYDALRKALIKAVYETLKVIEFEAAWGFMIQHFGVSDHEWLRSLYEDRVHWAPVFLKDTFFAGMSAARPGENITPFFDRYVHKQTPLKEFLDKYELALHKKYKEESFADIQSRSSSPLLKTRCSFELQLSRLYTREMFMKFQSEVEEVYSCFGTTQLHVDGPIIIFLVKERVLIEGNRREIRDFEVLYSRTVGEVRCICSCFNFYGYLCRHALCVLNFNGVEEIPHRYILSRWKKDYKRLYVPDHSSGTADDTDRIQWSNQLFRSALQVVEEGILSLDHYNVALQSLEESLSKVHDVEQRQE 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01300 667 ProSiteProfiles Zinc finger SWIM-type profile. 549 585 IPR007527 GO:0008270
Vimu2g01300 667 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 33 661 IPR031052 GO:0006355
Vimu2g01300 667 Pfam FAR1 DNA-binding domain 60 143 IPR004330 -
Vimu2g01300 667 Pfam MULE transposase domain 262 356 IPR018289 -
Vimu2g01300 667 Pfam SWIM zinc finger 536 581 IPR007527 GO:0008270
Vimu2g01300 667 SMART 26again6 560 587 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01300 Vimu-Chr2 8673322 8675325 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vimu2g01300 MULE 4.9e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01300 - K17604 gmx:100796448 1272.3