Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01296 ATGGCCAACGAAAACCCTGGCGACGAGGTTGTGTGCGTGACCGGCGCCAACGGTTTCATCGGTTCGTGGCTGGTTCGGACCCTCTTGGAGAACCAAAACCATAGCTACACCATCCACGCCGCCGTCTTCCCCGGTTCCGACGCCTCTCATCTCTTCACCCTCCACTCCGCCGCCGCCTCCCGCATCACCGTCTTCCCTGCCGACCTCCTCGACGCCGCCGCCATCCTCCGCGCCGTCGCGGGATGCTCTGGCGTCTTCCACGTTGCGTGCCCCTGCACACTGGAGGACCCCGCGGACCCTCAAAGTGAGCTTCTAGAACCCGCGGTGCAAGGCACGCTGAACGTGCTCGAAGCCGCGAGGAGCGTGGGCGTGCGGCGCGTGGTGCTCACGTCCTCGATCTCCGCAATGGTGCCGAACCCGGGGTGGCCAGCGGGAAGGGTAGTTGACGAGGAGTCGTGGACGGACGTGGAGTTCTGCAGGGCGAGGGGGAAGTGGTACCCTGTGGCGAAGACGGAGGCAGAGAGGGCGGCGTGGAAGTTCGAGGGCAGTGTCGAGGTGGTGGCGGTCCTGCCGGCGACGTGTCTGGGTCCGTTGCTGCAGCCGGAGCTGAACGCGAGCTCCGGCGTGCTACAGAGGCTGTTGATGGGGTCGAAGGAGACGCAGGAGTATCACTGGTTGGGTGCGGTGCATGTGAAGGACGTTGCTAAAGCTCATGTATTGCTCTACGAAACTCCCTCTGCTGCTGGTAGATATCTCTGCACCAATGGCATCTATCAGTTTTCTGCTTTTGCTGCCTCTGTCTCTGAATTGTACCCTGAATTCCCTATCCACAGGTTCCCAGAAGAAACACAACCTGGCCTGGTTCCTTGTAATGGTGCAGCAAGGAGACTAATAGACTTGGGCCTTGTCTTCACACCAATACAAGATGCTGTGAGAGAAGCAGCGGAGAGCCTTATAGCTAAAGGCTTCCTGCAGCGCTCACCCTCACAGAGTAATTAG 999 0.6026 MANENPGDEVVCVTGANGFIGSWLVRTLLENQNHSYTIHAAVFPGSDASHLFTLHSAAASRITVFPADLLDAAAILRAVAGCSGVFHVACPCTLEDPADPQSELLEPAVQGTLNVLEAARSVGVRRVVLTSSISAMVPNPGWPAGRVVDEESWTDVEFCRARGKWYPVAKTEAERAAWKFEGSVEVVAVLPATCLGPLLQPELNASSGVLQRLLMGSKETQEYHWLGAVHVKDVAKAHVLLYETPSAAGRYLCTNGIYQFSAFAASVSELYPEFPIHRFPEETQPGLVPCNGAARRLIDLGLVFTPIQDAVREAAESLIAKGFLQRSPSQSN 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01296 332 FunFam Cinnamoyl-CoA reductase 1 4 331 - -
Vimu2g01296 332 CDD FR_SDR_e 11 302 - -
Vimu2g01296 332 Gene3D - 2 332 - -
Vimu2g01296 332 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 10 311 - -
Vimu2g01296 332 Pfam NAD dependent epimerase/dehydratase family 11 247 IPR001509 -
Vimu2g01296 332 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 8 317 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01296 Vimu-Chr2 8654274 8655425 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01296 9 324 Monolignol Biosynthesis Gene Families AT2G02400 64.263 2.73e-155 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01296 - - vra:106775739 641.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01296 2 8654274 8655425 Vimu2g01296 2 8654274 8655425 ECH