Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01293 ATGGGTGAAAGAGCTTTAGTATTCCTACTACTATTTTTCACTCATTCGTTGATTGTACTAGCAAATACAGCAAATCCGGATTACACTGCTCTGCTGACTCTAATGAGTGAATGGGATAACACTCCACCTAATTGGGTGGGTTCAAATCCTTGCGGTGGCTGGGATGGCATTGAGTGTACAAATTCACGCATTACCTCCATATCATTAGCAAGCATGTCTTTGTCTGGTCAACTTACTTCAGATATTGGATTACTCTCTGAACTCGTGATCTTGGATCTGTCTTACAATAAGAATTTAACTGGACCACTTCCTGATAACATTGGAAAGTTGAGAAAGCTGAGAAACTTACTTCTTATTAACTGTGGTTTCACTGGTCCTATTCCAGCTACAATTGGAAATCTAGAACGGCTTGTCTTCCTATCTTTAAATTCGAATGGATTCACTGGTCCAATTCCAGCTGCCATTGGGAATCTCTCAAATGTTTATTGGCTAGACTTAGCTGAAAACCAGCTTGAAGGGCCCATCCCCATATCCAATGGAACTACCCCTGGTCTTGACATGATGTACAACACAAAGCATTTTCATTTTGGGGTGAATAAGCTTTCAGGAAACATACCTGCTGAACTTTTTAGCTCAAAAATGTCTCTCATTCATGTGCTTTTTGAAAGCAACCGATTTACTGGAAGCATTCCATCTACACTTGGCCTTGTCAAGTCTCTGGAGGTGGTCCGTTTTGACAACAACTTTTTTAGTGGATCTTTGCCTGAGAACATCAACAATCTTACAAGTGTTAGGGAACTGTTCCTGTCCAACAATCGCCTGTCTGGTTCCCTCCCAAACCTTACTGGAATGAATTCCCTCCGTTACCTAGATATGAGCAATAACAGTTTTGATCCATCAAACTTTCCACTGTCGTTGTCGACTCTTCCAGCATTGACGACAATAATGATGGAGAATACAAAACTTCAAGGAGCTATTCCTGTTTCTTTGTTCAACCTGCAACAGTTGCAGACAGTGGTGCTGAAAAACAACCAGCTAAATGGCACTTTAGATATTGGCACATCCATCAGCGACCAACTGGACCTCCTTGATTTGCAGATTAATTATATTGAAGAATTTAAACCACAAATCGACGTTTCTAAAGTGAATATAATACTTTTGAATAATCCAATTTGCCAAGAGACAGGAATTCCACAGAGTTATTGTTCCATAGCAACATCTAACAACTCATATTCAACGCCACCAGAAAACTGTGTACCTGTTCCCTGCAGCTTAGATCAGACATTAAGCCCCAAATGCAAATGTGCATACCCATATACAGGAACCTTAAATCTCAGAGCTCCTTCCTTCTCAGATTTGGGAAACGAGACTGTCTATGTAACCCTGCAGTTAAGTCTGGTGCAGTCTTTTCAACATAATGATATACCTGTTGATTCAGTTTCTTTAAGCAATCCAAGGAAGAACACGTATCAGTACCTTGAATTGACTTTAAAAGTATTTCCATCTGGCCAAGATCGTTTTAATCGAACTGGAATTTCCAGTCTAGCCTTTATTCTCAGCAACCAAACATACAAGCCTCCTTCAATGTTTGGACCATATTATTTTACTTCTGATGACTATGAAAACTTTATGAATGACACAGTACTAGAAGGTCCTGTAACAACATCTAGTAAATCTTCAAATACTGGCATCATAGCTGGCGCTGCGGCTGGTGGTGCTGCCCTGTTGGTTTTAATACTTGTTTTATTTGTGTATGCTCTCCAACGGAAGAATAAACCAGTAAAAGCAACTGGGAAGCACAATCCTTTTGAACAATGGGGTCCGGATGATAGCAGTAGTAGCATCCCACAGTTGAAAGGAGCAAGGTGCTTCAGTTTTGAAGAGATACAGAACTGCACTAAAAACTTCTCACAAGTCAATAATATAGGATCTGGCGGTTATGGGAAGGTTTATCGGGGAACTCTTCCCAACGGCCAACTAATTGCAGTCAAGCGAGCTCAGAAGGAATCTATGCAGGGAGGGTTGGAGTTCAAAACCGAGATTGAACTTCTATCAAGGGTCCACCATAAAAATCTTGTTAGCCTTATTGGTTTCTGCTTCGAGCAAGGAGAACAAATGCTGATTTATGAGTACGTTGCAAATGGTACTTTGAAGGACACTCTTTTAGAGTATTATATGACTCAACAGTTGACTGAGAAAAGTGATGTTTACAGCTTCGGAGTGCTAATGTTGGAGCTGATAACTGCAAGAAGGCCAATAGAGCGAGGGAAGTACATTGTGAAAGTGGTCAAGGGTGCTATAGACAAGACAAAAGGCTTCTGTGGTCTTGAGGAAGTTCTTGATCCTACTATTGAATTGGGGACAGCATTGAATGGTTTTGAGAAGTTTGTGGATCTTGCCTTGCAGTGTGTTGAAGAGTCAAGTTCTGACAGGCCTTCAATGAATTATGTGGTGAAAGAAATTGAGAACATGTTGCAGTTGGCCGGTTCAAGCCCCATTTTATCAGCATCAGTGTCCACTTCATCTAGTTATAACAATCCAACAAAGGTGGCACAAGATATTACCAAAGATCTTGAAGTCCTGAAGTCTCTGAGTGAGTCTTGGCAAGGCCAAATTCAAAACTGGGAGGGTTCAGATCCTTGCAGTTGGTATGGCATTAACTGCAGACACTCACGAGTGGTTTCCATATCATTGACAGATATTGGTTTGACCGGCGAGCTTTCTGGAGATATAGGATCACTTTCTGAATTGGATAATCTGGATCTCTCAAACAATAGGGGCCTCATAGGACCACTTCCACGAGAAATTGGAAACTTGAAGAAGCTAACGAAACTAACTCTTGTTGGTTGTGGTTTTACTGGTCGTATTCCAGATGAAATAGGATCTCTGCAACAACTTGAAGTCTTATCTTTAAACTCCAACAATTTTGCTGGCTCAATTCCACCTTCTATTGGCAATCTGTCAAATCTTACTTGGCTAGATTTAGCTGACAACCAGCTTGATGGATCCATCCCTGTATCTAGTGGCACTACCCCTGGTCTTGATATGATTTTTCACTGCAATCTACTAGTTGGCAGCATTCCTGAAACGCTTGGGCTAGTTACGAGTTTGACAGTGGTGCGCTTTGAAAATAATTCACTGAATGGACATGTGCCTCAGAGCTTCAACAACCTTATCAATGTCACAGACCTGTTGTTGTCCAACAATAAGCTGGAAGGTGCCATGCCAAACCTTACTGGGATGAACTCCCTAAGATACTTTGTGCTGAAAGACAACCACCTTGGTGGAACCTTGGATATTGGCACCAACTATAGCAGACAACTGCGAGTTATAGATTTGAGGTCAAATTCAATTCAGGACTATAAGCAATCAAATGATCCCCCACTTATCAGGATAATGCTCGCACACAACCCGATTTGCACTGAAAATGGAGCAGAAACGTTGCAGGATTACTGCACCAACCTGGATATCTTCGACCCAAAACAACAAAATAACTGTCAACATGGTAGCTGCAGCCCAGATCAGACTCTCAGCCCCAACTGCAAATGTGGATATCCATATACAGGAACATTGACTTGCAGAGCCCCTTCCTATTTTGACTGGAGTAATACAACAAACCTGGAGGAAATTCTAATGAAGGAATTTCAATCTCATCATCTACCTGTTGATTCAGTTTCTTTAACCCTTTCAACTAAAGATCCATTTCGAGGTTTTGAGTTTATCATACAAATTTTCCCACTACACCAAAATCATTTCAGCCAACAAGAGCAATCTAGTATAAGCTTCTTGCTTGGCAACCGAAGTGCATATAGTGCATTTGATTTTATTGCAGGAAACCATGTTGAAGGACCTAAGCAGTCAAGTAATTCATCAAGCACTGCAATAATTATTGGAGTAGCAATTGGAGGTTCTTCTCTTTTGCTAGTGTTATTAGCCCTGGCAGGTTTTTATGCTTTCCGTCAGAGGAGAAGGGCAGAAAGAGCAATATCTCGAAGCAATCCTTTTGGAAACTGGGATCCAAGTAAAAGCAATTGTGGCACCCCTCAGTTAAAAGCACCAAGGCAGTTCTCTTTTAAGGAAATTCAGAAATACACAAACAACTTCTCACAAGCCAATGATGTTGGATCAGGGGGTTATGGAAAGGGCTACTTGGATCCAGATTATTATACTAGTCAGCGGTTGACTGAAAAGAGTGATGTCTATAGTTTTGGGGTGCTAATGCTAGAGCTAATTACTGCAAAAAGGCCAATAGAACGAGGGAAATACATTGTGAAAGTGGTCAGGAATGCAATAGATAAGACAAAAGACTTGTATGGTCTTCACGAAACTATTGATCCAGCCATTTGTTCAGGATCAACACTGGAGGGTTTTGAGAAGTTTGTTGACCTTGCAATGGAGTGTCTTCAAGATTCAGGAGTCGACAGGCCAACAATGAGTGAAGTGGTTAAAGAAATTGAAGAAATGTTGCGATCTCTTGGTTTGAACCTAACATCCGAATTAGCAGCATCCTCTTCATCCAGTCATAGATTTCAGGAGGTGAGTATAGTGAGTTCCCAACAAGACCACCTTTACAGCAATGAGTCTGTTGGTTCAAGTGCAGAAAATTTATATTCAACAAGTGAGCATAGTTAA 4632 0.41 MGERALVFLLLFFTHSLIVLANTANPDYTALLTLMSEWDNTPPNWVGSNPCGGWDGIECTNSRITSISLASMSLSGQLTSDIGLLSELVILDLSYNKNLTGPLPDNIGKLRKLRNLLLINCGFTGPIPATIGNLERLVFLSLNSNGFTGPIPAAIGNLSNVYWLDLAENQLEGPIPISNGTTPGLDMMYNTKHFHFGVNKLSGNIPAELFSSKMSLIHVLFESNRFTGSIPSTLGLVKSLEVVRFDNNFFSGSLPENINNLTSVRELFLSNNRLSGSLPNLTGMNSLRYLDMSNNSFDPSNFPLSLSTLPALTTIMMENTKLQGAIPVSLFNLQQLQTVVLKNNQLNGTLDIGTSISDQLDLLDLQINYIEEFKPQIDVSKVNIILLNNPICQETGIPQSYCSIATSNNSYSTPPENCVPVPCSLDQTLSPKCKCAYPYTGTLNLRAPSFSDLGNETVYVTLQLSLVQSFQHNDIPVDSVSLSNPRKNTYQYLELTLKVFPSGQDRFNRTGISSLAFILSNQTYKPPSMFGPYYFTSDDYENFMNDTVLEGPVTTSSKSSNTGIIAGAAAGGAALLVLILVLFVYALQRKNKPVKATGKHNPFEQWGPDDSSSSIPQLKGARCFSFEEIQNCTKNFSQVNNIGSGGYGKVYRGTLPNGQLIAVKRAQKESMQGGLEFKTEIELLSRVHHKNLVSLIGFCFEQGEQMLIYEYVANGTLKDTLLEYYMTQQLTEKSDVYSFGVLMLELITARRPIERGKYIVKVVKGAIDKTKGFCGLEEVLDPTIELGTALNGFEKFVDLALQCVEESSSDRPSMNYVVKEIENMLQLAGSSPILSASVSTSSSYNNPTKVAQDITKDLEVLKSLSESWQGQIQNWEGSDPCSWYGINCRHSRVVSISLTDIGLTGELSGDIGSLSELDNLDLSNNRGLIGPLPREIGNLKKLTKLTLVGCGFTGRIPDEIGSLQQLEVLSLNSNNFAGSIPPSIGNLSNLTWLDLADNQLDGSIPVSSGTTPGLDMIFHCNLLVGSIPETLGLVTSLTVVRFENNSLNGHVPQSFNNLINVTDLLLSNNKLEGAMPNLTGMNSLRYFVLKDNHLGGTLDIGTNYSRQLRVIDLRSNSIQDYKQSNDPPLIRIMLAHNPICTENGAETLQDYCTNLDIFDPKQQNNCQHGSCSPDQTLSPNCKCGYPYTGTLTCRAPSYFDWSNTTNLEEILMKEFQSHHLPVDSVSLTLSTKDPFRGFEFIIQIFPLHQNHFSQQEQSSISFLLGNRSAYSAFDFIAGNHVEGPKQSSNSSSTAIIIGVAIGGSSLLLVLLALAGFYAFRQRRRAERAISRSNPFGNWDPSKSNCGTPQLKAPRQFSFKEIQKYTNNFSQANDVGSGGYGKGYLDPDYYTSQRLTEKSDVYSFGVLMLELITAKRPIERGKYIVKVVRNAIDKTKDLYGLHETIDPAICSGSTLEGFEKFVDLAMECLQDSGVDRPTMSEVVKEIEEMLRSLGLNLTSELAASSSSSHRFQEVSIVSSQQDHLYSNESVGSSAENLYSTSEHS 1543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01293 1543 ProSiteProfiles Protein kinase domain profile. 636 935 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g01293 1543 Gene3D Ribonuclease Inhibitor 1010 1180 IPR032675 -
Vimu2g01293 1543 FunFam Leucine-rich repeat protein kinase family protein 181 280 - -
Vimu2g01293 1543 Gene3D Transferase(Phosphotransferase) domain 1 721 855 - -
Vimu2g01293 1543 Gene3D Transferase(Phosphotransferase) domain 1 1316 1492 - -
Vimu2g01293 1543 SUPERFAMILY Protein kinase-like (PK-like) 622 852 IPR011009 -
Vimu2g01293 1543 Pfam Leucine rich repeat N-terminal domain 857 888 IPR013210 -
Vimu2g01293 1543 Pfam Leucine rich repeat N-terminal domain 24 59 IPR013210 -
Vimu2g01293 1543 FunFam Leucine-rich repeat family protein 26 180 - -
Vimu2g01293 1543 PANTHER RECEPTOR-LIKE PROTEIN 55 1382 1488 - -
Vimu2g01293 1543 SMART LRR_typ_2 1058 1081 IPR003591 -
Vimu2g01293 1543 SMART LRR_typ_2 963 986 IPR003591 -
Vimu2g01293 1543 SMART LRR_typ_2 914 939 IPR003591 -
Vimu2g01293 1543 SMART LRR_typ_2 261 284 IPR003591 -
Vimu2g01293 1543 SMART LRR_typ_2 987 1011 IPR003591 -
Vimu2g01293 1543 SMART LRR_typ_2 134 158 IPR003591 -
Vimu2g01293 1543 ProSitePatterns Protein kinases ATP-binding region signature. 642 664 IPR017441 GO:0005524
Vimu2g01293 1543 SUPERFAMILY Protein kinase-like (PK-like) 1382 1494 IPR011009 -
Vimu2g01293 1543 Gene3D Ribonuclease Inhibitor 282 384 IPR032675 -
Vimu2g01293 1543 Pfam Protein tyrosine and serine/threonine kinase 1383 1484 IPR001245 GO:0004672|GO:0006468
Vimu2g01293 1543 Pfam Protein tyrosine and serine/threonine kinase 723 820 IPR001245 GO:0004672|GO:0006468
Vimu2g01293 1543 Pfam Protein tyrosine and serine/threonine kinase 639 722 IPR001245 GO:0004672|GO:0006468
Vimu2g01293 1543 Gene3D Ribonuclease Inhibitor 181 281 IPR032675 -
Vimu2g01293 1543 Gene3D Ribonuclease Inhibitor 856 1009 IPR032675 -
Vimu2g01293 1543 Gene3D Ribonuclease Inhibitor 22 180 IPR032675 -
Vimu2g01293 1543 FunFam Leucine-rich repeat family protein 856 1009 - -
Vimu2g01293 1543 Gene3D Phosphorylase Kinase; domain 1 609 711 - -
Vimu2g01293 1543 Gene3D Phosphorylase Kinase; domain 1 1345 1385 - -
Vimu2g01293 1543 SUPERFAMILY L domain-like 43 393 - -
Vimu2g01293 1543 SUPERFAMILY L domain-like 864 1140 - -
Vimu2g01293 1543 MobiDBLite consensus disorder prediction 1524 1543 - -
Vimu2g01293 1543 FunFam Leucine-rich repeat protein kinase family protein 603 711 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01293 Vimu-Chr2 8632143 8650660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01293 723 853 Receptor kinase-like Gene Family AT5G49760 56.818 9.99e-36 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Vimu2g01293 PK_Tyr_Ser-Thr 1.2e-05 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01293 - - gmx:100780344 1170.22