Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01284 ATGGCTTCGGAGATTGAAATTTCTCCGGCCGACGCTCGCAAGGCTCCCGGCAAAGAGCAGCAAGCGGCCGGCGTCGGAATCCTTCTGCAGATCATGATGCTCGTCCTGTCCTTCGTCCTCGGTCACGTTCTCCGTCGCAAGAAGGTTTACATCATCCCCGAAGCCAGTGCTTCTCTTCTCATAGGGTTAATTGTTGGCATTCTAGCAAACATTTCGGACACAGAGACTAGTATCAGGGCGTGGTTCAATTTTCACGAGGAGTTTTTCTTCCTGTTCCTGCTACCTCCTATCATATTATATCCTCTGATAGATACCAAACCCTTTTTCTCGAATTTTGGAGCAATAGTCACATTTGCTATATTCGGCACCTTTATAGCTTCAATTGTTACCGGTATCTTGGTTTATCTTGGTGGTTTGCTCTTTCTAATGTATAAGCTACCTCTCGTAGAGTGCCTGATGTTTGGTGCTCTTATATCAGCTACTGATCCTGTAACTGTTTTGTCCATATTCCAGGAGCTGGGCACTGATGTCAATCTATATGCCTTGGTTTTTGGGGAATCCGTTTTGAATGATGCAATGGCAATTTCTTTGTACAGGACAATGTCATCTGTTAAAGCTCAGCCATCTGGACAAAATTTATTCATGGTGGTTGTTCGGTTTTTGGAGACTTTTGTTGGGTCAATGTCAGCAGGTGTTGGTGTTGGATTTATATCTGCTTTGATATCCTTTGAAATCCATTCTTATATTGACAAAAGAATTTATGGTTCCATCCAGCCTTCAGAACTTGGAGAGCTGTCTATTTGTCCTTTTCCCATATTTCTCGTCATGAAGCACTATGCATATTCCAATTTGTCACAAAGTTCTCAAAGATTTGCTTCAGCCTTCTTCGAGTTGATATCGTCTTTAGCTGAAACATTTGTATTTATATACATGGGCTTTGATATTGCTATGGAGCAACATAGCTGGTCACATGTTGGATTTATATTCTTCTCCATTGTATCCTTTTTGGCCCACAAATTGGACGTGGCTGCAAATGTCTTTTCTTGTGCTTATTTGGTCAATCTGGTCAGACCCAGTCATCGAAAGATACCTCCAAAACATCAGAAGGCACTTTGGTATAGTGGACTGCGAGGAGCAATGGCTTTTGCGCTTGCTCTGCAATCCGTTCATGATCTTCCAGAAGGACATGGACAGACCATCTTTACTGCAACTACTGCAATAGTTGTCTTGACGGTATTGCTAATTGGTGGTTCAACAGGTACCATGCTGGAAGCTCTAGATGTTGTAGGTGGTGATAATGATAGCCCTTTGTCTTCAGTTGGTACTATTACAAATTTTGATGGAAACAATGGTTATATTGCTCCTCCTTACAATGAAGAGTCATCTTCAGGGAACAAAATCAAGATGAAGCTAAAAGAATTCCATAAGAGTGCTGCATCCTTTACAGCAATTGATAAAAACTACCTCACCCCATTCTTTACAATTCAAAATGGAGATGAAGATGATGAAGCCGAGCCTTTTACATCGGGATTTCATGGGCAGAACCGTTATTCGACATGA 1560 0.4186 MASEIEISPADARKAPGKEQQAAGVGILLQIMMLVLSFVLGHVLRRKKVYIIPEASASLLIGLIVGILANISDTETSIRAWFNFHEEFFFLFLLPPIILYPLIDTKPFFSNFGAIVTFAIFGTFIASIVTGILVYLGGLLFLMYKLPLVECLMFGALISATDPVTVLSIFQELGTDVNLYALVFGESVLNDAMAISLYRTMSSVKAQPSGQNLFMVVVRFLETFVGSMSAGVGVGFISALISFEIHSYIDKRIYGSIQPSELGELSICPFPIFLVMKHYAYSNLSQSSQRFASAFFELISSLAETFVFIYMGFDIAMEQHSWSHVGFIFFSIVSFLAHKLDVAANVFSCAYLVNLVRPSHRKIPPKHQKALWYSGLRGAMAFALALQSVHDLPEGHGQTIFTATTAIVVLTVLLIGGSTGTMLEALDVVGGDNDSPLSSVGTITNFDGNNGYIAPPYNEESSSGNKIKMKLKEFHKSAASFTAIDKNYLTPFFTIQNGDEDDEAEPFTSGFHGQNRYST 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01284 519 PANTHER SODIUM/HYDROGEN EXCHANGER 11 504 IPR018422 GO:0006812|GO:0015385|GO:0016020|GO:1902600
Vimu2g01284 519 MobiDBLite consensus disorder prediction 499 519 - -
Vimu2g01284 519 PRINTS Na+/H+ exchanger signature 115 123 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vimu2g01284 519 PRINTS Na+/H+ exchanger signature 155 165 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vimu2g01284 519 PRINTS Na+/H+ exchanger signature 87 98 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vimu2g01284 519 Pfam Sodium/hydrogen exchanger family 33 243 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Vimu2g01284 519 Pfam Sodium/hydrogen exchanger family 274 424 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Vimu2g01284 519 Gene3D - 148 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01284 Vimu-Chr2 8571385 8580846 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01284 19 426 Antiporters AT3G05030 31.519 3.58e-35 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01284 K14724 - gmx:100790830 799.66