Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01273 ATGTACCCGAGGCTCATACACCCCCATGATGGGATTGTGGCGCAGGATGACATCCAGGCTGCTGCTTCCAACCTCTCTCACTCTCACAAGGGAGACCCTTGTCTCGTTCTCACTGCTGATCCCAAACCTCGCCTTCGTTGGACTCAGGACTTGCACGAGCGATTCGTTGATGCCGTCACACAGCTTGGGGGAGCAAGTAAAGCTACACCAAAAGCAATCATGCGGACCATGAATGTCAAGGGTCTGACTCTGTTTCATTTGAAGAGTCATCTTCAGAAATACAGGCTTGGTAAGCAATCTGGGAAAGATGTTGGTGAAGGATGCAAAGATGGTACGATTGTCATTCCCTTCTCTGGATCAATTATGTTCCCATCTTCTGAGACTTCACTAATTAACTCTAAGCTTTTCTGTCATTGTCTTGGCTTCAAACTGACTTCTTTTATGGAAGGAATATCAGGTTCATATCTTTTAGAAAGCCCTGGCACTGAGAACACTTCTCCAAAGCTGCCAACTTCCGACACAAACGAGGGATATGAAATCAAGGAGGCATTGAGAGCACAGATGGAAGTGCAGAGTAAGTTACATTTGCAAGTGGAGGTAAATTTCATTTTCCTATCGTATGGTATCATACGTTTGCTTATATTGAGTGTAATTGAAGCAAGTATGACACTGCAGGCAGAGAAGCATTTGCAGATTCGGCAGGATGCAGAGAGGAGATACATGGCCATGCTTGAAAGAGCTTGCAAGATGCTGGCTGATCAATTTATTGGTGCTACAGTTATAGACACTGACAGCCAAAAGTTTCAAGCAATTGGAAGCAAAACACCTAGAGGTACTTTGGTTGATCCTCTTGGATTTTACTCCTTGCCATCAGCTGAGGTGGCCGGGGTGAATGTTCCAGATGAAGAAATAGCACCTAGTCTCCCACCCCAAAGGGCTGATTGTTCAACTGAAAGTTGTTTAACCTCACATGAAAGTTCTGGAGGATTGACTTTAGAAGGATCTCCCGGTGGGGGAAAAAGAAGGATGCTAGGCATGGACTCCATGGCAGCTCCTTTGATCTGGAGTGAAGCTAAGATGAGAACTCAGGCCATCAATGTGGCCCAAGGTAGTCATCCTCAAGGAATAACTAGGTATGGCATGTAG 1146 0.4555 MYPRLIHPHDGIVAQDDIQAAASNLSHSHKGDPCLVLTADPKPRLRWTQDLHERFVDAVTQLGGASKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSGKDVGEGCKDGTIVIPFSGSIMFPSSETSLINSKLFCHCLGFKLTSFMEGISGSYLLESPGTENTSPKLPTSDTNEGYEIKEALRAQMEVQSKLHLQVEVNFIFLSYGIIRLLILSVIEASMTLQAEKHLQIRQDAERRYMAMLERACKMLADQFIGATVIDTDSQKFQAIGSKTPRGTLVDPLGFYSLPSAEVAGVNVPDEEIAPSLPPQRADCSTESCLTSHESSGGLTLEGSPGGGKRRMLGMDSMAAPLIWSEAKMRTQAINVAQGSHPQGITRYGM 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01273 381 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 39 99 IPR017930 -
Vimu2g01273 381 SUPERFAMILY Homeodomain-like 42 98 IPR009057 -
Vimu2g01273 381 MobiDBLite consensus disorder prediction 307 343 - -
Vimu2g01273 381 MobiDBLite consensus disorder prediction 312 330 - -
Vimu2g01273 381 FunFam Myb family transcription factor 41 99 - -
Vimu2g01273 381 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 15 331 IPR044848 GO:0003700
Vimu2g01273 381 Pfam Myb-like DNA-binding domain 45 95 IPR001005 -
Vimu2g01273 381 Gene3D - 41 99 - -
Vimu2g01273 381 Pfam MYB-CC type transfactor, LHEQLE motif 179 200 IPR025756 -
Vimu2g01273 381 NCBIfam myb-like DNA-binding domain, SHAQKYF class 42 97 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01273 Vimu-Chr2 8514896 8521892 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01273 31 323 G2-like Transcription Factor Family AT3G24120 38.870 1.10e-54 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vimu2g01273 Myb_DNA-binding 7.2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01273 - - gmx:100782369 555.829