Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01250 ATGACAGACAGGTGCAAGACCTCAGAACTGTTTAGTGATTTGGACCTCTCTTGGTTTTGGCGACAAAAACCCTTTGAAATTATTGAATCAAGAAAAAAGCTTTGCTTTACCTTTGACCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAAGCTACCACCAGCTCCCTATCTACAGAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCTAAAGCAACGAAGCTGTGTTCTGATCCTTCAAATTAGCTTTGCTAGGGATGTAGATATATGGTATCTCTTCTTGCTAAAATTGGTCTTAGGGTTCTGTCCTCTGTTTGTTCTTGGTGGAGGAACTGTTTTGGTTTTATCTGTTAAAAGGATCTATTTGTCTGATTCTGAATTATTTCTGATGGACTCAAAAACTAGCTCTAGATCTCTTCCGAAACACCATCAGAAGACGGCTGGAATTCAAACCCTTGAGGCAAAAGACAACGGGTCTTCAGGGAATCCAGCTTCTCTGAAAACAGGGAAAACTGAGCTGGCTGGTCCAGAGGATTTATCCAAGTCTGTAGGAACCGTTTCCAAACAGAATACTGGGGAAACTGCTGAAAACAAGAAGTTAGGAGTTTCAATCCAAAAAGGGTCTGCCGATTCCTTGAGCAATAAAAGTAGTTCTGGTGCTTCTTCATCTGTTCTCGACAAGGCGGATCGTGCTGTTAATGAGAACTTAGGCTCACAGGAAAACTCCATTGATCAAGACAAAAAGACATCGGAATATGGAAGTGTAAAGAACAGTTCTGTTTCTGCCAAAGTTAGTGATGGGGCGAGCAGTCTTGCAAAGACAAGTGGAAGTGCCAAGATTAGTGACAGAGCTGATTTTGTTGAGAGTGGTAAGAGCAGTATTTACAGAGGAAGCACAAGCAGTGATGTGAGTGATGAGAGTACTTGTAGTAGCTTTAGTAGCAGCATAAACAAACCTCACAAGGCAAATGACTTGAGATGGGAAGCCATTCAAGCAGTTCGAAGTAGAGATGGGGTTTTGGGATTAGGTCACTTTAGACTACTGAAGAGGCTGGGTTGTGGGGATATAGGCAGTGTTTACCTCTCTGAGTTGAGTGGAACTAAATGTTACTTTGCAATGAAGGTAATGGACAAAGGGTCCCTAGCGAGTCGCAAAAAGCTACTTCGTGCCCAGACAGAAAGAGAAATCCTGCAGTCTCTTGATCACCCATTTCTCCCAACTTTGTATACTCATTTTGAAACTGAGAAATTCTCATGTTTGGTAATGGAATTCTGCCCAGGTGGTGACCTCCATACTCTCAGGCAGAAGCAACCAGGGAAGCATTTTCCTGAGCAGGCAGTAAAATACAGTGCTTTACTGGCTTGTTATTCTACTGGGAAAGAAACTAGATTTGAGTCCTCTCAGGGTGTTAGTGGTCTCATCCTTATTTGTGCTTATTGCTCCAATTGCTGCACTAGATTTAAACAGCCTAATTCTAATGCTTTGATCATTTTATCCTTGTATCCAGATTCTGTTATGTCAATATATGATTTGATGGTAATCACAGACACTTTCCTTGTAAATTGCAGATTTTATGTAGCAGAGGTTCTTCTGGCTTTGGAGTATCTGCACATGCTTGGGATTGTCTACCGTGACCTTAAGCCAGAAAATGTCCTTGTTAGAGACGACGGACATATTATGCTCTCCGACTTTGATCTCTCCCTCCGATGTGCTGTCAGTCCGACCCTTGTGAAAACCTCATCCACGGATTCTGAGCCTTTAAGAAAGAACCCCGTTTACTGTGTCCAACCTGCATGTATTGAACCACCTTCCTGCATCCAACCATCCTGTGTTGCCCCCACCACATGCTTTTCACCCCGGCTCTTCTCTAGCAAATCAAAGAAAGACCGGAAGCCAAAAACTGAAATTGGCAACCAAGTGAGCCCATTACCTGAGCTGATTGCAGAGCCTACCGATGCTAGGTCGATGTCATTTGTTGGAACTCATGAATACTTGGCACCTGAGATCATCAAGGGTGAAGGTCATGGGAGTGCAGTTGATTGGTGGACTTTTGGGATCTTTCTATACGAGCTGTTGTTCGGTAAAACTCCTTTCAAGGGATCCGGTAACCGAGCCACGCTGTTTAACGTGGTGGGGCAGCCGCTGCGTTTTCCAGAAGCACCTGTTGTGAGTTTTGCAGCAAGGGATCTTATAAGGGGGTTGCTGGTGAAAGAACCTCAGCACAGATTGGCATACAAAAGAGGTGCAACTGAGATAAAGCAACACCCTTTTTTTGAAGGTGTGAACTGGGCATTGATCAGATGTGCTACCCCACCAGAGATCCCAAAGGCTGTAGAGTTTGAGAAGATACCCTCCCCAGCCTCATCAGGTGGTGTTGAAAAGGCTGTTAACCACATGTCAATAGCTAATCAGAAAGGTTCTGATAATTATCTGGAGTTTGATTTCTTCTAG 2457 0.4396 MTDRCKTSELFSDLDLSWFWRQKPFEIIESRKKLCFTFDPSLSLSLSLSLSLSYHQLPIYRALSLSLSLSLLKQRSCVLILQISFARDVDIWYLFLLKLVLGFCPLFVLGGGTVLVLSVKRIYLSDSELFLMDSKTSSRSLPKHHQKTAGIQTLEAKDNGSSGNPASLKTGKTELAGPEDLSKSVGTVSKQNTGETAENKKLGVSIQKGSADSLSNKSSSGASSSVLDKADRAVNENLGSQENSIDQDKKTSEYGSVKNSSVSAKVSDGASSLAKTSGSAKISDRADFVESGKSSIYRGSTSSDVSDESTCSSFSSSINKPHKANDLRWEAIQAVRSRDGVLGLGHFRLLKRLGCGDIGSVYLSELSGTKCYFAMKVMDKGSLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHTLRQKQPGKHFPEQAVKYSALLACYSTGKETRFESSQGVSGLILICAYCSNCCTRFKQPNSNALIILSLYPDSVMSIYDLMVITDTFLVNCRFYVAEVLLALEYLHMLGIVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLVKTSSTDSEPLRKNPVYCVQPACIEPPSCIQPSCVAPTTCFSPRLFSSKSKKDRKPKTEIGNQVSPLPELIAEPTDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPEAPVVSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPEIPKAVEFEKIPSPASSGGVEKAVNHMSIANQKGSDNYLEFDFF 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01250 818 CDD STKc_phototropin_like 346 778 - -
Vimu2g01250 818 SMART serkin_6 347 760 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g01250 818 SUPERFAMILY Protein kinase-like (PK-like) 323 780 IPR011009 -
Vimu2g01250 818 FunFam Serine/threonine-protein kinase D6PK-like 345 430 - -
Vimu2g01250 818 Pfam Protein tyrosine and serine/threonine kinase 348 581 IPR001245 GO:0004672|GO:0006468
Vimu2g01250 818 ProSitePatterns Serine/Threonine protein kinases active-site signature. 543 555 IPR008271 GO:0004672|GO:0006468
Vimu2g01250 818 ProSiteProfiles Protein kinase domain profile. 347 760 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g01250 818 MobiDBLite consensus disorder prediction 153 169 - -
Vimu2g01250 818 MobiDBLite consensus disorder prediction 254 276 - -
Vimu2g01250 818 MobiDBLite consensus disorder prediction 206 226 - -
Vimu2g01250 818 Gene3D Phosphorylase Kinase; domain 1 341 469 - -
Vimu2g01250 818 Gene3D Transferase(Phosphotransferase) domain 1 654 778 - -
Vimu2g01250 818 PANTHER FLIPPASE KINASE 1-RELATED 524 784 - -
Vimu2g01250 818 Gene3D Transferase(Phosphotransferase) domain 1 523 571 - -
Vimu2g01250 818 FunFam Serine/threonine-protein kinase OXI1 517 574 - -
Vimu2g01250 818 FunFam Serine/threonine-protein kinase AGC1-7 653 778 - -
Vimu2g01250 818 MobiDBLite consensus disorder prediction 153 276 - -
Vimu2g01250 818 MobiDBLite consensus disorder prediction 184 200 - -
Vimu2g01250 818 Pfam Protein kinase domain 657 760 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01250 Vimu-Chr2 8339588 8343563 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01250 171 818 AGC Kinase Gene Family AT5G47750 60.276 0.0 698
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vimu2g01250 PK_Tyr_Ser-Thr 1.6e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01250 K08286 - gmx:100781600 942.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01250 2 8339588 8343563 Vimu2g01250 2 8339588 8343563 ECH