Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01248 ATGTCTCAAACCTTAACTCAGACCATGCACCCTTCACCTCAACCTCTGTCCCTTCAGCTCGACAACAACCACTCTCCAAGAACCACCACCGTCACTGAGATAGAGGAAGATAACTCCTCAGACTTCCCCTTCAACAATCATCATCAACAACACAAGAAGGAGGAGGAAGACACTGTCTATGTCGCCGTCGGAAAGAGCCCCAGTAGCATCGAAGCCTTGTCATGGACCCTCGCCAACTTCACCACTCCATCTACCATTCTCTATCTCATACACGTTTTCCCAGAGATCAACCTCCTTCCAAATCCATTGGGAGTTGGAGTGATTCCGAAGGAGCAAGTGAGTCCTGAGCAGGTAGAGAGCTACATGGCACAAGAAAGAGGCAAGAGAAGAGAGCTCCTTAACAAATTCCTGCAATTATGTTCTGCTTCCAAGGTTAAGGTCGAAACAATCTTGATTGAGAGTGACTTGATTGCAAAGGCTATCATCGACCTCATTCCCATTCTTCAAATAAGAAAACTAGTGATTGGAGCAAGCAAATCTCAAATACGAAAATTGAGATCAAAGAAAGGGAGTGGCATAGCTGATCAGATACTTCAGAATGCTCCAGAAAGTTGCAATGTGAGTATTGTATGTGAAGGAAAGGAAGTACATGAACAGATAGCCGCTGCCATTACCACTGATACTTCCATGTCCCAGAAAAACAAGCATCATCAAAATGCTTCGGTTTCGTGTGTTTGTTTCAACTTTTAA 750 0.4427 MSQTLTQTMHPSPQPLSLQLDNNHSPRTTTVTEIEEDNSSDFPFNNHHQQHKKEEEDTVYVAVGKSPSSIEALSWTLANFTTPSTILYLIHVFPEINLLPNPLGVGVIPKEQVSPEQVESYMAQERGKRRELLNKFLQLCSASKVKVETILIESDLIAKAIIDLIPILQIRKLVIGASKSQIRKLRSKKGSGIADQILQNAPESCNVSIVCEGKEVHEQIAAAITTDTSMSQKNKHHQNASVSCVCFNF 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01248 249 CDD STK_N 58 213 - -
Vimu2g01248 249 Pfam Universal stress protein family 58 203 IPR006016 -
Vimu2g01248 249 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 52-LIKE 28 248 - -
Vimu2g01248 249 MobiDBLite consensus disorder prediction 1 25 - -
Vimu2g01248 249 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 58 208 - -
Vimu2g01248 249 Gene3D HUPs 43 224 IPR014729 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01248 Vimu-Chr2 8333112 8334548 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01248 62 214 Plant U-box Gene Family AT5G57035 33.333 4.77e-17 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01248 - - gmx:100777008 350.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01968 7 17765914 17766867 Vimu2g01248 2 8333112 8334548 PCT