Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01245 ATGATTCTGAAATTGGTAATCCATTTCATCATTTTTGTAACATGGTTTATACATACAGAGGTATCTGCACAAGATGATCTACAAGTAGTAGCAAAGCCTGGCTGTGATTCGCAGTGTGGAGATCTTGAAATTCCTTTTCCGTTTGGAATGAATGCTTCAGAATGCTACGCAGGGAAATGGTTTGAAATAGAATGCAGAAACACTTCAACATATCAAACACCTTACCTCAAGTCAATAGGACTGCAAGTCACGTCCATTGATGTCCAACAAGGCATGGTTACTATCAACAATCCCATTTACCGTAACAACTGCGGAACCAAAGATTCTACGCCGGTGAACCGGTCGCTGGAAGGAAGCCCTTTCGTGTATTCGCAACACAACAAATTTGTGGCCGCAGGTTGCAATATCATTGCATTGTTGAAGATAAATGGGTCAGAAGGTAGCGGTTGTGTGTCCATCTGCGACGAGGACTTGAAGGTGGATGATATTGGGAAAATGGAGCTTAAAAACAGTAATTGTAATGGGAAGTCCTGCTGTGAGAATTCCCTGCCAGCGTATCTTAAGGAATACAGCACTGAAGTAAAAGGTTTGAAGGAGAATGAAACGGATGGTGAGTGTAGTTACGCCATGGTTGTACAGCAAGAAGAACTGAACCCATACGAATGGGACTACGTCCCAGAGTATTCTTCTTATACTCCGAAAGGCTACTACTTTCCTGTGAATGGTGAGATGAAGGATTTGGATATGGTCCCTGTGGTGCTTGAATGGGAGATTCTCAACAACTTAAACCTTAAACTTCCTCCAGATGATCTCTCCCACTGTTTTGACACTAATATTACTTCTTCACTCCATAAACGTTCAGGTCAGAGATGTTCCTGCCCAGGCGGTTTCGGTAATCCCTATGTTGATGGAGGTTGTTCAGACTATGAGGACTACCGGAATTCGCCGAGTCACGTACCAATATCTGTCATAAAAGTTAATATGAATAAAGTTAAACTCTTCAGTTTAAAAGAATTGGAGAAGGCCACTGATAACTTTAATACAAATAGAGTACTTGGAAAAGGAGGTCAAGCTACTGTTTACAAAGGCATGTTGATCGATGGAACAATTATTGCAGTGAAAAAATTTAAGGTCCAAGGAAAGATTGAAGAATTTATCAATGAATTTGTCATTCTTTCACAAATTAACCATAGGAATGTGGTTAAGTTGTTAGGAAGTTGTTTGGAGACTAAAATTCCTTTGCTTGTTTATGAATTCATTCCTAATGGTAATCTTTTCGAGTACTTGCATTTACGAAATGAGGATATGCCATTGACATGGAACATGCGTTTGAGAATTGCCATTGAAGTTGCAGGAGCTTTATTTTACTTGCACTCTGCTGCTTCTCAACCTATTTATCATAAAGACATCAAGTCAACAAATATACTATTGGATGAAAAGTATAGGGCGAAAGTAGCAGACTTTGGTACATCAAGAATGATTTCCATTGATGTTACTCACCTTACTACAGTAGTTCAAGGAACATTTGGATACTTGGACCCTGAATTTTTTCAAACTAGTCAATTCACAGAAAAAAGTGATGTTTACAGTTTTGGAGTAGTTCTTGTTGAACTTTTAACAGGACAAAAGCCAATAACCCTCCTAAGTCAAGAGGAAGCTAAAAGTTTAGCTTCATATTTCATCATGTGTGTAGAGGAAAATTGTGTGTTTGATATTATTGATGAAAGAGTGATGAAGGAAGGGGAGAAATGTTATATCATGAAAGTTATCAATCTTGCAAGTCGATGTTTAGAGCTGAATGGAAAAAGGCGACCAACTATGAGGGAAATCACATTGGAATTAGAAGCTATTCGAAAATTGGAAAATGAGTCTAATGCACAAGAAGGGAAAGATGAGTTTGTTAGAAGTGAAGACTATAAATCTTGGGATGATAATTCTATTAACTCAGAAATAATGTCAACTATTGATCTAAGTAGCAGAATGACAATCTTGAAAGATGTTGATATTGTTACCATATGCTCTGAAGATCTTTCCGAGAAGCTGGGATATGAAGTGACCAAAGCAAAAGTATCTGCACGACATTACCTACAAGTAGCAAAGCCTGGCTGTGATTCGCAGTGTGGAGATCATGAAATTCCCTTTCCGTTTGGAATGAATGCTTCAGAATGCTACGCAGGGGCATGGTTTGAAATAGAATGCAAAAACACTTCCACATATCAAACACCTTACCTCAAGTTAATAGGAGTGCAGGTGACATTAATTGATGTCCAACAAGGCACGGTTACTATCAACAATCCCATTTACCGTCATAACTGCGGAACCAAATATTCTAGGCCAGTGTACCAGTCGCTGGAAGGAAGCCCTTACGTGTATTCGCAGGAACACAACAAATTTGTGGCCGTAGGTTGCAATATAATTACTTTTTTTCAGGTGAAATGGTCAGAAAGCAGTAGTTGTGCGTCCATCTGCGACGAGGACTTCAAGGTGGATGATATCAGGAAAATGAATCTTGGAAACAGTGATTGTAATGGGAAGTCCTGCTGTCAGAATTCCCTGCCAGCGTATCTTCAGGAATACATCACTGAAGTAAAAGGTTTGAAGGAGAATGAAACAGATCATGAGTGCAGTTACGCCATGGTTGTAAAGGAAAAACTGAACCACTACGAAGGGGAGGACGTCCCACACTCTCCTTATTATTATTATAAAGGTTACTTTCCTGTGAATGGTGAGATGAAGGATTTGGATGTGGTCCCTGTGGTGCTTGAATGGGAGATTCCCAACAACTTAAACCTTAAACTTCCTCCAGATTATCTCTCCCACTGTTTTGACACTAATATTACTTCTTCACTTGGTTCGGGCAAGAGATGTTCCTGCATATATTATTACGGTTTCGTTAATGTGGATAAAGTTAGACTCTTCAGCTTAAAAGAATTGGAGCAGGCCACTGATAACTTTAATACAAATAGAGTACTTGGAAAAGGAGGTCAAGCTACTGTTTACAAAGGCATGTTGATAGATGGAACAATTATTGTAGTGAAAAAATTTAAGGTCCAAGGAAAGATTGAAGAATTTATCAATGAATTTGTTATTCTTTCACAAATTAACCATAGGAACGTGGTTAAGTTGTTAGGAAGTTGTTTGGAGACTAAAATTCCTTTGCTTGTTTATGAATTCATTCCTAATGGTAATCTTTTTGAGTACTTGCATCAACAAAATGAGGATATGCCATTGACATGGGAGATGCATTTGAGAATTGCCATTGAAGTTTCAGGAGCTTTATTTTACTTGCACTCTGCCGCTTCTCAACCTATTTATCATAAAGACATCAAGTCAACAAATATATTGTTGGATGAAAAGTATAGGGCAAAGGTTGCAGACTTTGGAACATCAAGAATGATTTCCATTGATGTTACTCACCTTACTACAGTAGTTCAAGGAACATTTGGATACTTGGACCCTGAATTTTTTCAAACTAGTCAATTCACAGAAAAAAGTGATGTCTATAGTTTTGGAGTAGTTCTTGTTGAACTTTTAACAGGACAAAAGCCAATAACCCTTTTAAGTCAAGAGGAAGCCAAAAGTTTAGCTTCATATTTCATCATGTGTGTGGAGGAAAATTCTGTGTTTAATATTATTGATGAAAGAGTGATGAAGGAAGGGGAGAAATGTCATATCATGAAAGTTGTCAATCTTGCAAGTCAATGTTTAGAGTTGAACGGAAAGAGGAGACCAACTATGAGGGAAATCACATTGGAATTAGAAGATATTCGAAAGTTGAAAAAAGAGTCCAATGCACAAGAAGGACATGATGACTTTGTTAGAAGTGAAGACTATCAATCTTTGGATGATAATTCTTTTATCTCAGAAATAATGTCAACTTTTGATTTAAGTAGCAGAACAACAATCTTGAAAGATGTTCATATTGTTACCATGTGA 3936 0.3788 MILKLVIHFIIFVTWFIHTEVSAQDDLQVVAKPGCDSQCGDLEIPFPFGMNASECYAGKWFEIECRNTSTYQTPYLKSIGLQVTSIDVQQGMVTINNPIYRNNCGTKDSTPVNRSLEGSPFVYSQHNKFVAAGCNIIALLKINGSEGSGCVSICDEDLKVDDIGKMELKNSNCNGKSCCENSLPAYLKEYSTEVKGLKENETDGECSYAMVVQQEELNPYEWDYVPEYSSYTPKGYYFPVNGEMKDLDMVPVVLEWEILNNLNLKLPPDDLSHCFDTNITSSLHKRSGQRCSCPGGFGNPYVDGGCSDYEDYRNSPSHVPISVIKVNMNKVKLFSLKELEKATDNFNTNRVLGKGGQATVYKGMLIDGTIIAVKKFKVQGKIEEFINEFVILSQINHRNVVKLLGSCLETKIPLLVYEFIPNGNLFEYLHLRNEDMPLTWNMRLRIAIEVAGALFYLHSAASQPIYHKDIKSTNILLDEKYRAKVADFGTSRMISIDVTHLTTVVQGTFGYLDPEFFQTSQFTEKSDVYSFGVVLVELLTGQKPITLLSQEEAKSLASYFIMCVEENCVFDIIDERVMKEGEKCYIMKVINLASRCLELNGKRRPTMREITLELEAIRKLENESNAQEGKDEFVRSEDYKSWDDNSINSEIMSTIDLSSRMTILKDVDIVTICSEDLSEKLGYEVTKAKVSARHYLQVAKPGCDSQCGDHEIPFPFGMNASECYAGAWFEIECKNTSTYQTPYLKLIGVQVTLIDVQQGTVTINNPIYRHNCGTKYSRPVYQSLEGSPYVYSQEHNKFVAVGCNIITFFQVKWSESSSCASICDEDFKVDDIRKMNLGNSDCNGKSCCQNSLPAYLQEYITEVKGLKENETDHECSYAMVVKEKLNHYEGEDVPHSPYYYYKGYFPVNGEMKDLDVVPVVLEWEIPNNLNLKLPPDYLSHCFDTNITSSLGSGKRCSCIYYYGFVNVDKVRLFSLKELEQATDNFNTNRVLGKGGQATVYKGMLIDGTIIVVKKFKVQGKIEEFINEFVILSQINHRNVVKLLGSCLETKIPLLVYEFIPNGNLFEYLHQQNEDMPLTWEMHLRIAIEVSGALFYLHSAASQPIYHKDIKSTNILLDEKYRAKVADFGTSRMISIDVTHLTTVVQGTFGYLDPEFFQTSQFTEKSDVYSFGVVLVELLTGQKPITLLSQEEAKSLASYFIMCVEENSVFNIIDERVMKEGEKCHIMKVVNLASQCLELNGKRRPTMREITLELEDIRKLKKESNAQEGHDDFVRSEDYQSLDDNSFISEIMSTFDLSSRTTILKDVHIVTM 1311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01245 1311 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 25 625 IPR045274 GO:0007166
Vimu2g01245 1311 Coils Coil 1246 1266 - -
Vimu2g01245 1311 SUPERFAMILY Protein kinase-like (PK-like) 320 614 IPR011009 -
Vimu2g01245 1311 ProSiteProfiles Protein kinase domain profile. 346 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g01245 1311 Gene3D Transferase(Phosphotransferase) domain 1 420 642 - -
Vimu2g01245 1311 Gene3D Transferase(Phosphotransferase) domain 1 1059 1281 - -
Vimu2g01245 1311 FunFam Wall-associated receptor kinase 2 420 636 - -
Vimu2g01245 1311 ProSitePatterns Serine/Threonine protein kinases active-site signature. 465 477 IPR008271 GO:0004672|GO:0006468
Vimu2g01245 1311 Pfam Protein tyrosine and serine/threonine kinase 348 613 IPR001245 GO:0004672|GO:0006468
Vimu2g01245 1311 Pfam Protein tyrosine and serine/threonine kinase 987 1252 IPR001245 GO:0004672|GO:0006468
Vimu2g01245 1311 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1104 1116 IPR008271 GO:0004672|GO:0006468
Vimu2g01245 1311 SUPERFAMILY Protein kinase-like (PK-like) 966 1253 IPR011009 -
Vimu2g01245 1311 SMART serkin_6 346 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g01245 1311 SMART serkin_6 985 1260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g01245 1311 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 322 419 - -
Vimu2g01245 1311 ProSiteProfiles Protein kinase domain profile. 985 1256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g01245 1311 Pfam Wall-associated receptor kinase galacturonan-binding 703 764 IPR025287 GO:0030247
Vimu2g01245 1311 Pfam Wall-associated receptor kinase galacturonan-binding 35 96 IPR025287 GO:0030247
Vimu2g01245 1311 Gene3D Phosphorylase Kinase; domain 1 963 1058 - -
Vimu2g01245 1311 Gene3D Phosphorylase Kinase; domain 1 321 419 - -
Vimu2g01245 1311 FunFam Wall-associated receptor kinase 2 1059 1275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01245 Vimu-Chr2 8298229 8308510 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01245 703 883 Receptor kinase-like Gene Family AT1G69730 29.596 1.05e-11 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vimu2g01245 PK_Tyr_Ser-Thr 3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01245 - - vra:106774873 1192.95