Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01241 ATGAATATAAGTATTGATGTGGTAAAATATGTAGGAATTTCTACAAGCTTTGGATCTATCATTTTACTTCTTATTTTATGGCGGGTATTCAAGGTTACAAAAAAAATCATAGTGAAGAAATCCAGAGAAAAATTCTTCAAAAGAAATGGAGGATTATTGTTACAACAAAAATTGTCTTCTGGTGAAGTTAATATGAATAAAGTTAAACTCTTCAGTTTAAAAGAATTGGAGAAGGCCACTGATAACTTTAATACAAATAGAGTACTTGGAAAAGGAGGTCAAGCTACTGTTTACAAAGGCATGTTGATCGATGGAACAATTATTGCAGTGAAAAAATTTAAGGTCCAAGGAAAGATTGAAGAATTTATCAATGAATTTGTCATTCTTTCACAAATTAACCATAGGAATGTGGTTAAGTTGTTAGGAAGTTGTTTGGAGACTAAAATTCCTTTGCTTGTTTATGAATTCATTCCTAATGGTAATCTTTTCGAGTACTTGCATTTACGAAATGGGGATATGCCATTGACATGGAACATGCGTTTGAGAATTGCCATTGAAGTTGCAGGAGCTTTATTTTACTTGCACTCTGCTGCTTCTCAACCTATTTATCATAAAGACATCAAGTCAACAAATATACTATTGGATGAAAAGTATAGGGCGAAAGTAGCAGACTTTGGTACATCAAGAATGATTTCCATTGATGTTACTCACCTTACTACAGTAGTTCAAGGAACATTTGGATACTTGGACCCTGAATTTTTTCAAACTAGTCAATTCACAGAAAAAAGTGATGTTTACAGTTTTGGAGTAGTTCTTGTTGAACTTTTAACAGGACAAAAGCCAATAACCCTCCTAAGTCAAGAGGAAGCTAAAAGTTTAGCTTCATATTTCATCATGTGTGTAGAGAAAAATTGTGTGTTTGATATTATTGATGAAAGAGTGATGAAGGAAGGGGAGAAATGTTATATCATGAAAGTTATCAATCTTGCAAGTCGATGTTTAGAGCTGAATGGAAAAAGGCGACCAACTATGAGGGAAATCACATTGGAATTAGAAGCTATTCGAAAATTGGAAAATGAGTCTAATGCACAAGAAGGGAAAGATGAGTTTGTTAGAAGTGAAGACTATAAATCTTGGAATGATAATTCTATTAACTCAGAAATAATGTCAACTATTGATCAAAGTAGAAGAACAACAATCTTGAATGATATTCATATTGTTACCATGTGA 1230 0.326 MNISIDVVKYVGISTSFGSIILLLILWRVFKVTKKIIVKKSREKFFKRNGGLLLQQKLSSGEVNMNKVKLFSLKELEKATDNFNTNRVLGKGGQATVYKGMLIDGTIIAVKKFKVQGKIEEFINEFVILSQINHRNVVKLLGSCLETKIPLLVYEFIPNGNLFEYLHLRNGDMPLTWNMRLRIAIEVAGALFYLHSAASQPIYHKDIKSTNILLDEKYRAKVADFGTSRMISIDVTHLTTVVQGTFGYLDPEFFQTSQFTEKSDVYSFGVVLVELLTGQKPITLLSQEEAKSLASYFIMCVEKNCVFDIIDERVMKEGEKCYIMKVINLASRCLELNGKRRPTMREITLELEAIRKLENESNAQEGKDEFVRSEDYKSWNDNSINSEIMSTIDQSRRTTILNDIHIVTM 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01241 409 SMART serkin_6 83 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g01241 409 Gene3D Transferase(Phosphotransferase) domain 1 157 380 - -
Vimu2g01241 409 ProSiteProfiles Protein kinase domain profile. 83 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g01241 409 FunFam Wall-associated receptor kinase 2 157 374 - -
Vimu2g01241 409 ProSitePatterns Serine/Threonine protein kinases active-site signature. 202 214 IPR008271 GO:0004672|GO:0006468
Vimu2g01241 409 Pfam Protein tyrosine and serine/threonine kinase 85 350 IPR001245 GO:0004672|GO:0006468
Vimu2g01241 409 Gene3D Phosphorylase Kinase; domain 1 54 156 - -
Vimu2g01241 409 FunFam Wall-associated receptor kinase 2 53 156 - -
Vimu2g01241 409 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 22 362 IPR045274 GO:0007166
Vimu2g01241 409 SUPERFAMILY Protein kinase-like (PK-like) 64 351 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01241 Vimu-Chr2 8283636 8285253 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01241 11 375 Receptor kinase-like Gene Family AT1G69730 58.696 2.42e-151 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vimu2g01241 PK_Tyr_Ser-Thr 9.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01241 - - vra:106774873 721.079