Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01239 ATGACGAGTGAACAATTGGGGCTGCTAAAAGTCATTGTTGTGCAAGGGAAAAGGTTGGTGATCCGGGATTTCAAGACCAGTGATCCTTATGTTGTGCTGAAACTAGGGAACCAGACTGCAAAGACCAAGGTAATTAACAGCTGCTTGAATCCTGTTTGGAATGAAGAGCTTAATTTCACTCTTACAGAACCCTTGGGAGTTCTGAATTTGGAAGTGTTTGATAAAGATCTGTTGAAGGCTGATGACAAGATGGGAAATGCTTTCCTCAACCTTCAACCATTAGTGTCTGCAGCGAGATTAAGAGATATCTTACGAGTGTCCTCTGGTGAGACAACCTTAAGGAAGGTCATACCTGATACTGAAAACTGTCTTGTCCGTGAAAGCAGTATCAATTGTGTTAATGGTGAGGTGGTGCAGAATGTTTGGTTAAGGCTTCGTGGAGTAGAGTCTGGGGAACTAGAGTTGATCATCAAGCTGGCCACACCCATTACTCCTAAAACATAG 504 0.4306 MTSEQLGLLKVIVVQGKRLVIRDFKTSDPYVVLKLGNQTAKTKVINSCLNPVWNEELNFTLTEPLGVLNLEVFDKDLLKADDKMGNAFLNLQPLVSAARLRDILRVSSGETTLRKVIPDTENCLVRESSINCVNGEVVQNVWLRLRGVESGELELIIKLATPITPKT 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01239 167 Pfam C2 domain 8 100 IPR000008 -
Vimu2g01239 167 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 5 158 IPR035892 -
Vimu2g01239 167 Gene3D C2 domain 1 117 IPR035892 -
Vimu2g01239 167 PRINTS C2 domain signature 68 76 IPR000008 -
Vimu2g01239 167 PRINTS C2 domain signature 47 60 IPR000008 -
Vimu2g01239 167 PRINTS C2 domain signature 23 35 IPR000008 -
Vimu2g01239 167 ProSiteProfiles C2 domain profile. 1 104 IPR000008 -
Vimu2g01239 167 CDD C2_ArfGAP 6 151 - -
Vimu2g01239 167 SMART C2_3c 8 103 IPR000008 -
Vimu2g01239 167 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 5 159 IPR044562 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01239 Vimu-Chr2 8276096 8277117 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01239 4 155 C2H2 Transcription Factor Family AT4G21160 44.737 1.00e-37 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01239 - - gmx:100499880 306.99