Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01229 ATGAATCCCCACCTAATAATGTTCCCCCCGCGTCAAATTGGCCTTCAAATTTGTACTGTTAAAGCAAAATCAGTGGACAAGCTTTGCAAAATAGTAAAGAAGCAGTTGGTCGTGGCTGAAGGTGAAATCTTTGAGATCGTAACGGCACTCGAGGAAGAATTCGGTATTTCCATTGGGAAGAGAGGCTCTAGGAAGGAGTTCGGCGTCATGACCGGCAAAGAACTCGGCGGTGAGCGGCGACCGGTTGGGAGAAGGAGGTGTAAGGTCACCGAGGACAGCTGGTCTCGTTGGGATCAAGAAAAACGCGTTCCAACGAGTGTTTCTTTGTCCCGTGTACGGAAGGAGAGAGAGAGGGCGATGATGTCGCGACCGGCGGTGGCTCCGATGGGGCGTGGTGTCGCCGACGACGCCAAGACCGGTAGAAGGAGGTGGCTGGTTCGAAGACGTGCTGGTGTATATGTATGTCTCATTCCCATACACTATGCTCTCACTATCGCTGAAGAGGACACTCTTCTCCAAAATTACGTCGCCACCCACGGCGACGGTCACTGGAATTCCATCGCACGTTGTGCAGGCACTTATTATACTCTTTCCATACGCCTTAAGAGATCAGGGAAAAGTTGCAGGTTGAGATGGTTAAACTACTTGCGGCCCGATGTTCGTCGTGGAAATATAACACTCCAGGAACAGATAACCATTCTGGACCGAAAAATGATATTTTAA 723 0.5007 MNPHLIMFPPRQIGLQICTVKAKSVDKLCKIVKKQLVVAEGEIFEIVTALEEEFGISIGKRGSRKEFGVMTGKELGGERRPVGRRRCKVTEDSWSRWDQEKRVPTSVSLSRVRKERERAMMSRPAVAPMGRGVADDAKTGRRRWLVRRRAGVYVCLIPIHYALTIAEEDTLLQNYVATHGDGHWNSIARCAGTYYTLSIRLKRSGKSCRLRWLNYLRPDVRRGNITLQEQITILDRKMIF 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01229 240 ProSiteProfiles Myb-like domain profile. 167 216 IPR001005 -
Vimu2g01229 240 Pfam Myb-like DNA-binding domain 166 231 - -
Vimu2g01229 240 SUPERFAMILY Homeodomain-like 166 236 IPR009057 -
Vimu2g01229 240 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 167 220 IPR017930 -
Vimu2g01229 240 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 166 235 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vimu2g01229 240 Gene3D - 165 221 - -
Vimu2g01229 240 CDD SANT 166 216 IPR001005 -
Vimu2g01229 240 SMART sant 166 218 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01229 Vimu-Chr2 8180805 8181846 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01229 167 235 MYB Transcription Factor Family AT1G68320 62.319 1.19e-23 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu2g01229 Myb_DNA-bind_6 7.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01229 K09422 - gmx:778065 115.161