Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01215 ATGGACCTCTTCGCCGCCGATCACTTCCCCGTCCCCGACCACGTCGCTCCATTTCCAGATTCCGGCGACCTTCTTTTCCCTGCCGACCTCCTCTCCCACCGCCACAACCCCCAGAAGCTCCGCCCCATCCGGCCCCTTCCCTCCGCTCTCAATGCCCACCCTCGTCCGCCCGATCCGATTGCCTCCGGGTCGGGTCACGCCCCGAGCCAAGAATCTGAAGTGTGTTGCTTTTTTGATGAGTGTTTGCCATCAGGTGTTGGGCACGAACTTTGTTGTCCATTTGATGCTATGAGCTCTGTGTTGCGTCTTTATGAGAGAGAAAGAGACCGAGCCCACAACTTGCAGTGTGCTTTTTTGGTGGATGAAAAGAAATGCATTGTACGCTCGGCTTTGGATGCGGAGGATGAAGAGGAGAATGATGGCAATTCATCAGCAAGCCCTGAAGGAAATGGTCCTAGAAAGAGGAGAAGAAAGACGGTGAGAAAGCTTGAAGGTTTTGTGAAGAATTTGGTGACAAAGGTGATGGAGAAGCAGGAACAGATGCACAAACAGTTGGTGGAAATCATAGAAAAGAAGGAAAGGGAAAGGATTAGGAGAGAAGAAGCTTGGAAGAATGAGGAGATGGAGAGAATTAGAAAAGAGGAAGAGGCTAGAGCTGAAGAAAAGTCTCGCAGTTTGGCCCTCATATCCTTCATTCAGAATCTGTTGGGCCACGAAATTCAAATTCCCCAAGCAGTAGAAGCATGCAGCAAAAGAGAAGAGGGTGAAGTTGAAGTGAATGCTCGTAAAGAATTTAGTAGTGATCCTAGTAAGAGTAGATGGCCTGATGTTGAAGTGCAATCACTTATCACAGTGAGAACATCATTGGAGCATAAGTTCCGTTTCATGGGATCGAAAGGGTCAATTTGGGAGGAGATATCTGTAGCAATGTATGCGTTGGGCTATAATCGGTCTGCAAAGAAATGTAAGGAGAAGTGGGAAAACATCAACAAATACTATAAAAGGACAATAGGGAGTGGCAAGAAGAGGCGTCAAAATAGTAAAAGCTGCCCTTATTTTGATGAGTTGGACATTCTGTATAGAAACGGCCTCCTAAGTATTGGAAATGCCTTGAGCAATACCACTGATGCTCCCCAGATTGAGCAAAAGGAGTAG 1155 0.4727 MDLFAADHFPVPDHVAPFPDSGDLLFPADLLSHRHNPQKLRPIRPLPSALNAHPRPPDPIASGSGHAPSQESEVCCFFDECLPSGVGHELCCPFDAMSSVLRLYERERDRAHNLQCAFLVDEKKCIVRSALDAEDEEENDGNSSASPEGNGPRKRRRKTVRKLEGFVKNLVTKVMEKQEQMHKQLVEIIEKKERERIRREEAWKNEEMERIRKEEEARAEEKSRSLALISFIQNLLGHEIQIPQAVEACSKREEGEVEVNARKEFSSDPSKSRWPDVEVQSLITVRTSLEHKFRFMGSKGSIWEEISVAMYALGYNRSAKKCKEKWENINKYYKRTIGSGKKRRQNSKSCPYFDELDILYRNGLLSIGNALSNTTDAPQIEQKE 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01215 384 ProSiteProfiles Myb-like domain profile. 266 330 IPR001005 -
Vimu2g01215 384 CDD GT1 272 336 - -
Vimu2g01215 384 Coils Coil 204 225 - -
Vimu2g01215 384 MobiDBLite consensus disorder prediction 132 158 - -
Vimu2g01215 384 Pfam Myb/SANT-like DNA-binding domain 272 357 IPR044822 -
Vimu2g01215 384 MobiDBLite consensus disorder prediction 41 66 - -
Vimu2g01215 384 Gene3D - 274 335 - -
Vimu2g01215 384 Coils Coil 175 195 - -
Vimu2g01215 384 FunFam Trihelix transcription factor GT-2 274 335 - -
Vimu2g01215 384 PANTHER FI21293P1 134 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01215 Vimu-Chr2 8121136 8122998 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01215 154 362 Trihelix Transcription Factor Family AT5G47660 45.536 6.06e-54 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vimu2g01215 Myb_DNA-bind_4 5.5e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01215 - - gmx:100820302 466.463