Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01212 ATGGCCGAGTCCGATAACGATTCCGGAGGTCAAGCCGGAAACGCGAGTGGAGGCAATGAATTGTCGGGGTGTAGAGAGCAAGACAGGTTCCTTCCGATAGCAAACGTGAGCAGGATCATGAAGAAGGCGTTGCCGGGGAACGCGAAGATCTCGAAAGAGGCGAAGGAAACCGTGCAAGAGTGTGTGTCGGAGTTCATCAGCTTCATAACAGGTGAAGCATCTGATAAGTGTCAGAAGGAGAAGAGAAAAACTATCAACGGTGATGACCTACTGTGGGCCATGACCACACTGGGGTTTGAGGAGTATGTGGAGCCTCTCAAGATTTACCTGCACAAGTATCGGGAGATGGAGGGGGAGAAAACTGCTATGATGGGAAGGCCACAGGGTGGTGGTGGTGGTGGTGGCGGCGGTGATCAGAGGGATGAGGCTTATATCCATGGCCATGCTCATGGAGGTATGGTGCCAAACTCTATGATGGCGATGATGGGGCATCAGGGACACGTGTATGGATCTGGGAGTGCGGGATCAGCATCTTCTGCAAGAACTAGATAG 552 0.5254 MAESDNDSGGQAGNASGGNELSGCREQDRFLPIANVSRIMKKALPGNAKISKEAKETVQECVSEFISFITGEASDKCQKEKRKTINGDDLLWAMTTLGFEEYVEPLKIYLHKYREMEGEKTAMMGRPQGGGGGGGGGDQRDEAYIHGHAHGGMVPNSMMAMMGHQGHVYGSGSAGSASSARTR 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01212 183 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vimu2g01212 183 MobiDBLite consensus disorder prediction 124 143 - -
Vimu2g01212 183 MobiDBLite consensus disorder prediction 1 21 - -
Vimu2g01212 183 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Vimu2g01212 183 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Vimu2g01212 183 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Vimu2g01212 183 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 7 147 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vimu2g01212 183 SUPERFAMILY Histone-fold 27 144 IPR009072 GO:0046982
Vimu2g01212 183 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Vimu2g01212 183 FunFam Nuclear transcription factor Y subunit B-3 19 143 - -
Vimu2g01212 183 Gene3D Histone, subunit A 19 143 IPR009072 GO:0046982
Vimu2g01212 183 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01212 Vimu-Chr2 8110839 8111390 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01212 1 126 CCAAT-HAP3 Transcription Factor Family AT4G14540 82.540 2.32e-72 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vimu2g01212 CBFD_NFYB_HMF 5.9e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01212 K08065 - gmx:100305641 258.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01212 2 8110839 8111390 Vimu2g01212 2 8110839 8111390 ECH
Vimu7g01976 7 17822793 17823236 Vimu2g01212 2 8110839 8111390 PCT