Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01210 ATGATGACGTCACCACCATCCCCAAAACCCAACACAACACTCCTCACCTTACCCTACCCCACTCCCTCACTCTCTCACCTCAACTCCTTTCTCTTTCTTCACTTTCTTCTTTCCACCCATCTCACATTTCTTTTTTTTACTATCATACAATTATTGTTTTACCCCACTCCTTCCCTTTCTCTTTCTCCTTTTTCCCTTTTTTTTTTCTCTTCTTACTCCTTCCCTCTCTCTCCCTGCACAACTACCATGGGCAATGTGAATGGGAGAGACGATGTCAACGGTACTCCCTCCGAGACCGAAGGAGAAGAAGAAGAAGACGACGACGAAGCTGCCGCTGTTGCACCTACTCACGGTGTCGCCGATTGCATGTCCGCCAACCCTGGCTATCGTGCGCCTTCCGATATGATGGGTCATTCTCCCCCTGCTAGCCCTAGAACCACCCAATCTCCCTTCATGTTCGCCCCACAAGTTCCGGTGGTTCCACTACAAAGACCTGATGAGATGCATACTCCAAGCCCTTCCTGGATGCAGACTACGTCAGGGTACGAGGATATGTACAGTGAACTTGGAATTCCAACGATGATTACTTGGAGTTATGATGGGAAAGAAGTGGCTGTGGAGGGATCATGGGACAATTGGAAAACAAGAATGTCCTTACAGAGATCAGGGAAGGATTTCACAATAATGAAAGTGTTGCCATCCGGTGTATACCAATTTCGATTTATTGTGGATGGCCAGTGGAGGTATGCACCTGACTTGCCTTGGGCTCAAGACGATGCGGGTAATGCTTACAACATTTTGGACTTGCAGATTATCTTCTCTTCCTGCAAGAACTTTGTTTTCAATGGATATGATCCTGAACTCATTTCAATGTCACTTTGTGGCTACGTAACTCTGCAGAACTTGCAATTCCTAACCAGGGGATGGGAAGATGATGATAAAATCGGTTTCATTGCATATCTTAGTGCTAAAAACAATGATTATGTTCCTGAGGACATTGGAAGCATTTCTAGTTTTGAACCTCCTAAATCACCAGACTCTAGTTATAACAACTTACAACTTAGTTCCGAAGATTATGCAAAGGAGCCACCATTGGTTCCTCCATATTTGCAAATGACGCTTCTTAATATTCCGTCAACAAATATGGAAGTCCAACCTCTTACAGCCAGACCTCAGCATGTAGTGCTCAATCATCTTTACATGCAGAAAGGAAAGGGTAGCCCTTCAGTGGTTGCACTTGGCACAACTCATCGGTTTCTAGCCAAATATGTGACTGTGGTGCTGTACAAGTCTTTGCAGAGGTAA 1305 0.4498 MMTSPPSPKPNTTLLTLPYPTPSLSHLNSFLFLHFLLSTHLTFLFFTIIQLLFYPTPSLSLSPFSLFFFSSYSFPLSPCTTTMGNVNGRDDVNGTPSETEGEEEEDDDEAAAVAPTHGVADCMSANPGYRAPSDMMGHSPPASPRTTQSPFMFAPQVPVVPLQRPDEMHTPSPSWMQTTSGYEDMYSELGIPTMITWSYDGKEVAVEGSWDNWKTRMSLQRSGKDFTIMKVLPSGVYQFRFIVDGQWRYAPDLPWAQDDAGNAYNILDLQIIFSSCKNFVFNGYDPELISMSLCGYVTLQNLQFLTRGWEDDDKIGFIAYLSAKNNDYVPEDIGSISSFEPPKSPDSSYNNLQLSSEDYAKEPPLVPPYLQMTLLNIPSTNMEVQPLTARPQHVVLNHLYMQKGKGSPSVVALGTTHRFLAKYVTVVLYKSLQR 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01210 434 Pfam Glycogen recognition site of AMP-activated protein kinase 191 270 IPR032640 -
Vimu2g01210 434 SUPERFAMILY AMPKBI-like 329 431 IPR037256 -
Vimu2g01210 434 SMART AMPKBI_2 342 432 IPR006828 GO:0005515
Vimu2g01210 434 SUPERFAMILY E set domains 191 268 IPR014756 -
Vimu2g01210 434 Gene3D - 335 432 - -
Vimu2g01210 434 Gene3D Immunoglobulins 186 272 IPR013783 -
Vimu2g01210 434 CDD E_set_AMPKbeta_like_N 192 268 - -
Vimu2g01210 434 MobiDBLite consensus disorder prediction 85 109 - -
Vimu2g01210 434 Pfam 5'-AMP-activated protein kinase beta subunit, interaction domain 360 430 IPR006828 GO:0005515
Vimu2g01210 434 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-1 83 271 IPR043554 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01210 Vimu-Chr2 8096316 8099144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01210 193 267 Protein tyrosine phosphatase (PTP) family AT3G01510 31.169 8.77e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01210 K07199 - gmx:100777497 509.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01978 7 17831648 17836956 Vimu2g01210 2 8096316 8099144 PCT