Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01202 ATGACGGCCATACCTTCTAAAAACCTATGTGTTCGGAGGCAACAATGTCCTTGTGGAGATTGGAAGTGTTATATTACATATGAGGGTGATTCTGAAGAGGGTTCTGCGGCACTTGAATTGGTGAAGGAAGAGAAAGCATCGTCCGGGGCTATGATTACTCCCTATGTTGGAATGGTTTTTAAGAGTGATGATGATGCTTTTGAGTATTATGGCAACTTTGCTAGGAAGAATGGGTTCTCTATTAGGAAGGAAAGGTCTAGAATTAGCCCGCAGTTGGGGATTTACAAGCGTGACTTCGTTTGCTACCGGTCCGGCTTTGCCCCGGTGAAGAAGAAGCCTAATGGAGAACACCATAGAGATAGGAAATCAGTGAGGTGTGGATGTGATGCAAAGATGTACCTATCCAAGGAGGTTGTAGAAGGGGTTTCCCAGTGGTTTGTTGTGCAGTTTAGTAATGTGCACAATCATGAACTTTTGGAAGATGATCAAGTGCGTCTTTTGCCCGCCTATCGTAAAATTCATGAGGCTGATCAAGAGCGTATACTCTTGCTCTCCAAGGCAGGGTTTCCAATTCATCGGATAGTGAAAATGCTGGAGCAGGAAAAGGGGATTCAAGGGGGGCAGCTGCCTTTCTTGGAAAGGGATGTGAGGAACTTTGTTCAAAACCGTAAAAAGGTTGTTCTAGAGAATGAGGCATTGCTCAGTGAGAAAAGAGAAAATGATGTTTTGGAACTTCTTGAGGCGTGCAAAGTTATGAAAGAAGCAGATGATGAGTTTGTGTATGATTTTACTGTGGATGGGAATGATAAGGTTGAAAATGTAGCTTGGTCATATGGCGACTCAGTTAATGCAAATGCTATGTTTGGCGATGTTGTTTATTTTGACACATCTTATAGATCGGTCACTTATGGATTGCTTTTTGGAGTATGGTTTGGTATTGATAGCTATGGTAGAACTATTTTTTATGGTTGTGTTTTGTTGCAGGATGAAACACCTCAATCCTTCTCATGGGCATTACAGACTTTTGTCAGGTTCATGAGAGGAAGATGTCCACAGACTATTCTAACTGATCTAGACCCGGGACTTAGAGATGCGATTATAAGTGAATTTCCAGGAACTAAACATGTTGTCCCTCAATGGAATATTCTACACAAGGTACCCTGTTGGTTTTCTCCTACTCTGGGTTCTCGGTATGCAGAATTTAAATCTGAGTTCGATGCCTTATTTCACATTGAGAATACAGAGGAATTTGAACTTCAGTGGAGCCAGATGATTTCTGTGTTTGGACTTGGTTCAGATAAACATGCTGATTTACTATATACTGTTCGGGCATCCTGGGCACAAGCCTATGTAAGAGGTTACTTTCTGGCTCGAATGGCAACAATAACTTACTCAAAGTCTATAGATGCATTTTTGAAAGGAATTTTCTCTGCTCATACGTGTTTGCGTAGCTTTTTTGAGCAGGTTGGCATTTCTGCAAGTTTTCAACATCAAGCGTTTAAGGAGACTCAATATATTCAGCTCAAAACTTGCATACCGATTGAAGAGCATGCCCGGAGTATTCTCACTCCTTTCGCCTTTAATGCCTTGCAGCAAGAGCTGTTGCTAGCAATGCAATATGCTGCATCCGAAATGGCCAATGGATCATACATTGTGCGGCATTTCAAAAGGATGAACGGGGAACGGCTTGTAATATGGTTGGTTGAAGATGATCAGATACATTGTTCTTGCAAGGAATTTGAATCCTCAGGGATACTATGCAGGCATGCTCTTCGTGTATTTGTAATAAAGAACTACTTTCAGTTACCTGATAAGTACTTTTTAGGTAGATGGAGGCGGGAATGCTCATTAATTGTCGTTGATGATAATAATAATAATCAAGGTGTTGGAGGGGAATGGTTTCAAGAATATCAGTCTCTGGCTGAAACTTTATTTCAAGAATCATCAATTACAAAGGAGCGATCTGACTATGTGCGTAAAGAACTGACGAAAGAACTTAATAGGATTCTTAACGAGGTTAGAAATCTCCCTGAGGCTGATGGAGTCTGCATGAGCATGAACATGTCAATTTCACCAGCCAACTAG 2085 0.4129 MTAIPSKNLCVRRQQCPCGDWKCYITYEGDSEEGSAALELVKEEKASSGAMITPYVGMVFKSDDDAFEYYGNFARKNGFSIRKERSRISPQLGIYKRDFVCYRSGFAPVKKKPNGEHHRDRKSVRCGCDAKMYLSKEVVEGVSQWFVVQFSNVHNHELLEDDQVRLLPAYRKIHEADQERILLLSKAGFPIHRIVKMLEQEKGIQGGQLPFLERDVRNFVQNRKKVVLENEALLSEKRENDVLELLEACKVMKEADDEFVYDFTVDGNDKVENVAWSYGDSVNANAMFGDVVYFDTSYRSVTYGLLFGVWFGIDSYGRTIFYGCVLLQDETPQSFSWALQTFVRFMRGRCPQTILTDLDPGLRDAIISEFPGTKHVVPQWNILHKVPCWFSPTLGSRYAEFKSEFDALFHIENTEEFELQWSQMISVFGLGSDKHADLLYTVRASWAQAYVRGYFLARMATITYSKSIDAFLKGIFSAHTCLRSFFEQVGISASFQHQAFKETQYIQLKTCIPIEEHARSILTPFAFNALQQELLLAMQYAASEMANGSYIVRHFKRMNGERLVIWLVEDDQIHCSCKEFESSGILCRHALRVFVIKNYFQLPDKYFLGRWRRECSLIVVDDNNNNQGVGGEWFQEYQSLAETLFQESSITKERSDYVRKELTKELNRILNEVRNLPEADGVCMSMNMSISPAN 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01202 694 SMART 26again6 573 600 IPR006564 GO:0008270
Vimu2g01202 694 ProSiteProfiles Zinc finger SWIM-type profile. 563 598 IPR007527 GO:0008270
Vimu2g01202 694 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 47 666 IPR031052 GO:0006355
Vimu2g01202 694 Pfam SWIM zinc finger 569 594 IPR007527 GO:0008270
Vimu2g01202 694 Pfam FAR1 DNA-binding domain 68 159 IPR004330 -
Vimu2g01202 694 Pfam MULE transposase domain 291 384 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01202 Vimu-Chr2 8050858 8054316 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vimu2g01202 MULE 3.9e-14 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01202 - - gmx:100817107 1311.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01202 2 8050858 8054316 Vimu2g01202 2 8050858 8054316 ECH