Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01198 ATGGCTGAAGAAGAAAGCCACTATCTTGGTTACTTGGAAGATATGTATGAAGACAAGAAGAGACAAAAAAAGGTGAAGGTGCGTTGGTTTCATCATGGTCAGGAAGTTAAGCAGGTGATTCCACAGCTGATTCTGCAAGAGGGAGAGGTTTTCATCACACCTCATGTTCAGGTGATCAGTGCTGAGTGTGTTAATGGTCCTGCGACTGTGTTGACTCCTAAGCATTATGAGAAATACCTGGCTGCTGTGCCTCATACATCTTTATCCGAGATCCATACGTGCTTTAGGCAGTTTAAAAACAATAGGCTTAAGCCCTTCACACTTACAAAGTTGCGTGGGTATAGTAGCCAGCCTGTTCTTTCTTGTTTAAATAGTCCTATTCTCTCCAAGAGAAAGGCAAAGTTTGAAAAGTCACACACAGATGATGATGAGAACTTCACTCAAGATGATCCTTTAAGGTCCAGCAATAAGAGGATTAGAAGTTCTAAGGATCACATATTTGAGAAGGGTTTTTCTGGCCTGCAAGTCTCTGTTCCTGCCAATGAAATGACAAAATGTGGACTGAAATATCCTAGTTTAAAGTTAAAACTATCAAGAAAAACAGTAGGTATTAAGGTTATTGGACCAAAGCCTAAACTTTCTTTTCAGGTCGGTGCTAAGATAGAGGTTCTTTGTCAAGATAGTGGCATTAGAGGATGCTGGTTTAGATGTAAAATCTTGAGCATGTCTCCGAGGCTGCTGAAGGTCCAGTATGATGATTTGCTTGATATAGACGGAGCACAGAAACTAGAGGAATGGGTCCCTGCATCTAGAGTGGCAGCTCCTGATAAATTGGGTATGCGATGTTCAGGCCGCTTAACAGTCCGGCCATACCCTCCTGAATACAATTCAGGTCGCACTTTTGAGATTGGAGCAGCAGTGGATGCCTGGTGGTGTGATGGATGGTGGGAAGGTGTCATAACTGCAGTTAATGTCAGCGGAGATGGAATCCTGCAAGTTTATACCCCTGGTGAAGAGAGGTTCCTAAAGGTCGAGCAGAAGAACATTCGGATTTCCCGAGATTGGATCAATAACAGATGGATTGATATACGAGGAAAGCCTGACATTGGCACTTATTTAACTTCAAATGTGAGGTCCGGCATCGGGATGTCAGCTAATTCTGCAGTGGTTGATGGATCCATGTCTGATTGCTCTGCTTTAGAAAGTAAATCATCATCAATTCCCAAAGTTGAACTTGCTAAGAAGGTTGAACCGGAATCGTCTGGTTTGGAAATCCATGTTGATCTGGAAAATATGAAGGGAATAACTCTGAGGGAGCCACTCTATGCCATTGATGAGGACAAGGATAACTCTGGTGGTGGCTGTGATGATGAAGCTGACAAGGCTGTGAAGACACTTCTGACCATAAATGAACACAAGGATAATAACTCTTGTAGTGATGATGACACTGAGGATGATGATAATGTCAATGGTGATGATGTTGACAACGGGGAGGCCAGTGAGGAAAATTTTGATTGTTGTGAACCAAAACTTGAGGCAGCAGAAGCAATACAAGTTGCATAA 1563 0.4267 MAEEESHYLGYLEDMYEDKKRQKKVKVRWFHHGQEVKQVIPQLILQEGEVFITPHVQVISAECVNGPATVLTPKHYEKYLAAVPHTSLSEIHTCFRQFKNNRLKPFTLTKLRGYSSQPVLSCLNSPILSKRKAKFEKSHTDDDENFTQDDPLRSSNKRIRSSKDHIFEKGFSGLQVSVPANEMTKCGLKYPSLKLKLSRKTVGIKVIGPKPKLSFQVGAKIEVLCQDSGIRGCWFRCKILSMSPRLLKVQYDDLLDIDGAQKLEEWVPASRVAAPDKLGMRCSGRLTVRPYPPEYNSGRTFEIGAAVDAWWCDGWWEGVITAVNVSGDGILQVYTPGEERFLKVEQKNIRISRDWINNRWIDIRGKPDIGTYLTSNVRSGIGMSANSAVVDGSMSDCSALESKSSSIPKVELAKKVEPESSGLEIHVDLENMKGITLREPLYAIDEDKDNSGGGCDDEADKAVKTLLTINEHKDNNSCSDDDTEDDDNVNGDDVDNGEASEENFDCCEPKLEAAEAIQVA 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01198 520 Gene3D - 1 140 IPR043151 -
Vimu2g01198 520 ProSiteProfiles BAH domain profile. 1 109 IPR001025 GO:0003682
Vimu2g01198 520 MobiDBLite consensus disorder prediction 470 508 - -
Vimu2g01198 520 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 213 401 - -
Vimu2g01198 520 MobiDBLite consensus disorder prediction 480 502 - -
Vimu2g01198 520 SMART agenet_At_2 213 278 IPR014002 -
Vimu2g01198 520 SMART agenet_At_2 299 357 IPR014002 -
Vimu2g01198 520 CDD Tudor_Agenet_AtDUF_rpt1_3 215 293 - -
Vimu2g01198 520 MobiDBLite consensus disorder prediction 134 157 - -
Vimu2g01198 520 Pfam Agenet domain 218 293 IPR008395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01198 Vimu-Chr2 8022405 8024263 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01198 227 355 PHD Transcription Factor Family AT5G58610 27.820 1.03e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01198 - - vun:114188137 949.118