Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01197 ATGCCGCCAGTGGAGAAAACTCGGAATCTGGAGCCGCAGTATCTTGATAAGTTTGATCCTTCAATGTACTATGAAGTTATAGGCACACCTATTTATCTCATAGCCGATTTGCATGGAAATTGCACAGTATCAATGGGGCATAGTTGGTTGTCTGTGCCATTTGCCCGTCAAGGGGCAGGTGAAGGGAAAAAGGCTCTGTACCATTGCAATTATTGTAATAAAGATATAACAGGAAAAATCCGGATTAAGTGTGCCATGTGCCCGGATTTTGACTTGTGTATAGAGTGCTTTTCCGTTGGAGCTGAGGTGACACCTCACAAAAGCAACCATCCTTACAGGGTTATGGATAATTTGTCTTTCCCTCTTATTTGCCCAGACTGGAATGCAGATGATGAAATTTTGCTTCTAGAGGGAATCGAAATGTATGGCTTGGGAAACTGGACAGAAGTAGCTGAGCACGTTGGAACCAAAAACAAAGAGTCATGCATCGAACACTATAAGAACATATACTTGAGCTCCCCATTCTTTCCTGTTCCGGACATGTCTCATGTGGTTGGGAAAAACAGAAAAGAACTTCTTGCCATGGCAAAGGGGCAGGGTGAAGACAAGAAAGGAATTTCCATGGGGGATCTTAGTTTAAAGGCAGAATCTCCCTTCTCTCCATCTAGAGCCAAGGTTGAAGATTCACATAAAGCTGGCACTGCTAATCGTTTGTCTTCCAATTTGAATTCAGAGTTAGATTCTGGTCCCTCGGGTAACACACACTCTGCAGCTGGTGCTAACCAAAAGGCATCTAATGTGACCAGGGGAAAAGGTGGTCCTGGAGTCATTAAAATGGAAGATTCTCAGATAGACAGAGATTTTGGAGGAAAGAAGCCAACTTCCTCGGGAAATGAAGGTCCTTCTTTAGTAGAATTGAGTGGTTACAATGCTAAAAGACAAGAATTCGATCCTGAATATGATAATGATGCTGAACAACTACTTGCTGAAATGGAATTTAAGGATACTGACTCTGAGGAAGAGCGAGAGTTGAAATTACGTGTATTGCGTTTATATTCAAAGAGGCTTGATGAAAGAAAGCGGAGGAAGGATTTCATACTCGAAAGAAATTTGTTATACCCAAATCCATTGGAGAAGGATTTAACATCCGAGGAGAAGGCAATGTGTCGAAAATATGATATATTCATGCGCTTTCATTCTAAGGAAGATCACGATGAATTGCTTAGAACAATGCTCTTTGAGCATAGAAGTTGGAAAAAAATTCAAGAGCTTAAGGAAGCCCGGTTAGCCGGTTGCCGCAATTCAGCTGATGCTGAAAAATATATCTCGTTGAAGAGAAAGAGGGAAGCTGAAGAAAATGCTCGAAGGACAAGGACAAAAGAAAGTGCTCAGGTTGGGCCTAGCAATCAGGGAATTCCAAATGCATTGACTTCTCCAGATTCAGCTGGTAAGGATCTGAGTGCAAGACCTGCAGGGCCAGCTACTTCTAGTTCTGTCAACGAGATGGATGGCATAGGATACAGTGGAGCAGATTTACTTTCTGAAGCGGAGAAACGTTTGTGCTGTGAGCTAAGATTGTCTCCAGCTACGTATCTAAAAATGCAAGAGCAACTGTCACTGCAAATACTTGCTGGCACTGTCTCTGCAAAATCTGATGCTCATCAATTGTTCAAGTTGGATGCCATGAAAGTTGACAGGGTGTATGATATGCTTATTAAAAAGGGAATCGGTTTACCCTGA 1740 0.423 MPPVEKTRNLEPQYLDKFDPSMYYEVIGTPIYLIADLHGNCTVSMGHSWLSVPFARQGAGEGKKALYHCNYCNKDITGKIRIKCAMCPDFDLCIECFSVGAEVTPHKSNHPYRVMDNLSFPLICPDWNADDEILLLEGIEMYGLGNWTEVAEHVGTKNKESCIEHYKNIYLSSPFFPVPDMSHVVGKNRKELLAMAKGQGEDKKGISMGDLSLKAESPFSPSRAKVEDSHKAGTANRLSSNLNSELDSGPSGNTHSAAGANQKASNVTRGKGGPGVIKMEDSQIDRDFGGKKPTSSGNEGPSLVELSGYNAKRQEFDPEYDNDAEQLLAEMEFKDTDSEEERELKLRVLRLYSKRLDERKRRKDFILERNLLYPNPLEKDLTSEEKAMCRKYDIFMRFHSKEDHDELLRTMLFEHRSWKKIQELKEARLAGCRNSADAEKYISLKRKREAEENARRTRTKESAQVGPSNQGIPNALTSPDSAGKDLSARPAGPATSSSVNEMDGIGYSGADLLSEAEKRLCCELRLSPATYLKMQEQLSLQILAGTVSAKSDAHQLFKLDAMKVDRVYDMLIKKGIGLP 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01197 579 Pfam Myb-like DNA-binding domain 126 169 IPR001005 -
Vimu2g01197 579 Gene3D - 121 172 - -
Vimu2g01197 579 ProSiteProfiles SWIRM domain profile. 493 579 IPR007526 GO:0005515
Vimu2g01197 579 MobiDBLite consensus disorder prediction 448 502 - -
Vimu2g01197 579 MobiDBLite consensus disorder prediction 460 481 - -
Vimu2g01197 579 MobiDBLite consensus disorder prediction 212 304 - -
Vimu2g01197 579 Pfam Zinc finger, ZZ type 65 107 IPR000433 GO:0008270
Vimu2g01197 579 SUPERFAMILY Homeodomain-like 488 576 IPR009057 -
Vimu2g01197 579 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 127 174 IPR017930 -
Vimu2g01197 579 ProSitePatterns Zinc finger ZZ-type signature. 69 96 IPR000433 GO:0008270
Vimu2g01197 579 SUPERFAMILY Homeodomain-like 120 173 IPR009057 -
Vimu2g01197 579 ProSiteProfiles Myb-like domain profile. 127 170 IPR001005 -
Vimu2g01197 579 Gene3D - 494 577 IPR036388 -
Vimu2g01197 579 CDD SANT 127 169 IPR001005 -
Vimu2g01197 579 FunFam Transcriptional adapter 2 494 577 - -
Vimu2g01197 579 ProSiteProfiles Zinc finger ZZ-type profile. 64 120 IPR000433 GO:0008270
Vimu2g01197 579 CDD ZZ_ADA2 67 115 IPR041983 -
Vimu2g01197 579 Gene3D - 59 115 IPR043145 -
Vimu2g01197 579 FunFam Transcriptional adapter 60 115 - -
Vimu2g01197 579 SUPERFAMILY RING/U-box 67 129 - -
Vimu2g01197 579 ProSiteProfiles SANT domain profile. 122 174 IPR017884 -
Vimu2g01197 579 SMART zz_5 63 108 IPR000433 GO:0008270
Vimu2g01197 579 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 67 574 - -
Vimu2g01197 579 FunFam Transcriptional adapter 2 120 172 - -
Vimu2g01197 579 SMART sant 123 172 IPR001005 -
Vimu2g01197 579 MobiDBLite consensus disorder prediction 233 268 - -
Vimu2g01197 579 PIRSF Txn_adaptor_ADA2 55 578 IPR016827 GO:0003713|GO:0006357|GO:0035065
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01197 Vimu-Chr2 8016127 8020564 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01197 43 577 EF-hand Containing Proteins AT3G07740 46.558 1.97e-155 455
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu2g01197 Myb_DNA-binding 6.2e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01197 K11314 - gmx:100811887 918.687
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01197 2 8016127 8020564 Vimu2g01197 2 8016127 8020564 ECH