Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01191 ATGCAAACGTCCCAGAAACACCCAACTTCATCCGGTTTCGATTTATACCACCAGCCTGTGCAAAACGTGGATCCCTACACTCGTTACCAAGTATTGCAAAGGAATTCTTGCCATGAAATCCATGATAACAACAGTCAGGGAACCACTATCTCGTTTGAACCCTGCAAGGAGCAATACTTTACCCTTGAATCATCCCCAGCACTCAATGATCTCATAGGTTGTGATTCTCCTTCCTATGCTAGTGTATCGTCCAATTCCAACAGAAGTCCTTTTTCTCCGCATGCTTCTCATTCATACCATTCAGACCAGCATCAGTCATCTGACAACAACTATGGATCACCAACGAGTGCACACTCCAGTGCTGATGATAGCTATGAACTGAAGCACAAGCTCAGAGAACTTGAGATTTCACTCTTGGGGCCTGATTCAGAAATTGTTGACAGTTGTCACTGCTGCTACGAGGGTGGCCACCACGGAGCATCTCCGATGGCTAAATATAATTGGGATCAGGTTGTAGAAATGATTCCAAAACTAGACTTGAAAGAAGTCCTCAGTCGGTGTGCACAGGCTGTATCTGATGGTGATTTTGAAACAGCGGTGGGATTTATGAATAATGTATTGCCAAAGATGGTATCAGTAGGTGGTGATCCAATCCAGAGGTTAGGGGCCTATATGTTGGAGGGTCTGAGAGCAAGGTTGGAGTCTTCAGGGAGCCTAATATACAAAGCCTTGAAATGTGAACAACCAGCAAGCAAAGATCTCATGAGTTACATGCACATCTTGTACCAGATTTGCCCATATTGGAAGTTTGCTTATGTATCTGCCAATGCTGTCATTGGAGAAGCAATGCTAAATGAATCAAGAATCCACATAATTGACTTCCAAATTGCACAGGGCACTCAATGGATGCTGCTTATTGATGCTCTTGCATCTCGTCCCGGTGGAACACCTTTCATTCGTGTAACTGGTGTGGATGATTCCGAATCCTTTCATGCAAGAGGAGGAGGACTTGACATTGTAGGAAAACGTCTCTCAGATTATGCGAAATCCCGTAGAGTTCCATTTGAGTTCCACAGTGCAGCAATGTCTGGATGCGAGGTTGAACTAGAAAACCTTGTGGTTCTACCGGGGGAAGCTCTGGCTGTGAATTTCCCTTTTGTTTTGCACCACATGCCAGATGAGAGTGTGAGCACAGAGAACCACAGGGACAGGCTACTAAGACTGGTTAAGAATTTATCACCCAAGGTTGTGACACTCGTTGAGCAAGAATCGAACACCAACACTTCCCCCTTTTTCCAAAGGTTTGTTGAGAGCTTGAGTTATTACAGTGCAATGTTTGAGTCAATAGATGTGGCCCTGCCCAGAGAGGATAAGCAAAGGATCAGTGCTGAACAACACTGTGTGGCTCGTGACATAGTTAACATGATAGCTTGTGAGGGGCCTGAGAGGGTGGAAAGGCATGAACTTTTGGGGAAGTGGAGGTCAAGATTTTCAATGGCTGGTTTTGCACCATGCCCTTTGAGTTCCTCAGTCACCAATGCAGTTAGAAACATGTTAAGAGAGTTTAATGGAAATTATAGGTTAGAACATATAGATGGTGCGCTCTATTTAGGATGGAAGAGAAGAGCCCTCTGTACATCTTCTGCCTGGAGATGTTACTGA 1662 0.4471 MQTSQKHPTSSGFDLYHQPVQNVDPYTRYQVLQRNSCHEIHDNNSQGTTISFEPCKEQYFTLESSPALNDLIGCDSPSYASVSSNSNRSPFSPHASHSYHSDQHQSSDNNYGSPTSAHSSADDSYELKHKLRELEISLLGPDSEIVDSCHCCYEGGHHGASPMAKYNWDQVVEMIPKLDLKEVLSRCAQAVSDGDFETAVGFMNNVLPKMVSVGGDPIQRLGAYMLEGLRARLESSGSLIYKALKCEQPASKDLMSYMHILYQICPYWKFAYVSANAVIGEAMLNESRIHIIDFQIAQGTQWMLLIDALASRPGGTPFIRVTGVDDSESFHARGGGLDIVGKRLSDYAKSRRVPFEFHSAAMSGCEVELENLVVLPGEALAVNFPFVLHHMPDESVSTENHRDRLLRLVKNLSPKVVTLVEQESNTNTSPFFQRFVESLSYYSAMFESIDVALPREDKQRISAEQHCVARDIVNMIACEGPERVERHELLGKWRSRFSMAGFAPCPLSSSVTNAVRNMLREFNGNYRLEHIDGALYLGWKRRALCTSSAWRCY 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01191 553 MobiDBLite consensus disorder prediction 83 124 - -
Vimu2g01191 553 ProSiteProfiles GRAS family profile. 171 551 IPR005202 -
Vimu2g01191 553 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 115 545 IPR005202 -
Vimu2g01191 553 Pfam GRAS domain family 181 551 IPR005202 -
Vimu2g01191 553 MobiDBLite consensus disorder prediction 83 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01191 Vimu-Chr2 7974903 7976564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01191 1 551 GRAS Transcription Factor Family AT4G17230 59.025 0.0 624
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vimu2g01191 GRAS 9.6e-126 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01191 - - gmx:100819190 966.452
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01191 2 7974903 7976564 Vimu2g01191 2 7974903 7976564 ECH
Vimu7g01992 7 17918358 17923759 Vimu2g01191 2 7974903 7976564 PCT