Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01188 ATGGTTTCGCTGGAGGAATCACGGTCTAATTCGAGCCGTTTCCCCTTGGCCAGGAGTTACCTGTACCACTCCTCGGTTTCGTCCAAAACGCAGCGTCATACAGGAAGGTCCATGCGAACGATACGCTCCAATTTCTTCCAAGACGACAACAGCAGCTGCTCCTTCACCGAGAAATCCACCTGTGTATCGGAGAACCTCACTGACTCCGTCGTCGACCTCCGCCTCGGCGAGCTCGCGTCACGGAACAACAAATCCTTGAAGTCCTCACCCGCAGAGGAGGACTTCCTCGACCTCTCCCAGGCCTTCAGTGATTTCTCCGCATGTAGCAGCGACATCTCCGGCGAGCTGCAGCGCCTCGCGACACTCCCATCACCGGAATGCGTGCAGAAGAACAATATATCTGGAGAAGTGCACCCGGAGCAGGAGCCGGAGCCCTGCACGGGTTTCCTGCAGAGGGAGAGCTTCTCCACTGAGATTATCGAGAGCATTTCGCCGGAGGATCTCCAGCCGACGGTGAAGATTTGCATCGACGGCCTCCAGTCGCAGTCGGTGGCGGTAAAGCGCTCCGCGGCGGCGAAGCTCCGGCTGCTAGCGAAGAACCGCGCCGACAACCGGGTTTTGATTGCAGAGTCCGGCGCGGTGCCTGTTCTAGTCCCTCTTCTCCGTTGTAGCGATCCTTGGACGCAGGAACATGCGGTAACGGCGCTGTTAAATCTATCTCTACACGAGGACAATAAAATGCTGATAACCAATGCTGGAGCAGTGAAGTCGCTGATTTATGTGCTGAAAACGGGAACGGAAACTTCGAAGCAGAACGCGGCATGCGCGCTTCTGAGCCTGGCGTTAGTGGAAGAGAACAAAAGCTCCATCGGGGCTTCCGGAGCGATACCGCCCTTGGTTTCGCTTCTTCTGAACGGTTCGAGCAGAGGGAAGAAGGACGCGCTGACGACGCTTTATAAGCTGTGTTCTGTGAGGCAGAACAAGGAGAGGGCAGTGAGCGCCGGTGCGGTGAAGCCGCTGGTGGAGCTGGTGGCGGAGCAGGGGAGCGGCATGGCGGAAAAGGCCATGGTGGTGCTGAACAGCCTGGCAGGGATTCAGGAAGGGAAGGACGCAATTGTGGAAGAAGGTGGGATCGCTGCTCTTGTGGAAGCCATTGAGGATGGGTCTGTTAAGGGGAAGGAGTTCGCGGTTCTGACCCTTCTTCAGCTCTGTGTTGACAGTATCAGAAACAGAGGGTTTCTTGTCAGAGAGGGTGGGATTCCTCCTCTCGTTGCCCTTTCTCAAACTGGGAGTGTTCGAGCTAAGCACAAGGCCGAAACGCTGCTTCGATATTTGAGGGAATCAAGACAAGAGGCGTCTACTTCGAGTCAACATATAGCATGTTTTAGTTTTTCAGATACTGCTCAGGGTATTACATATGCTAGATGGACTATGGAGCGTGGTGTTTTTGAGGATTCGACCGGGAATGGGAATGGTGTAGGACCCTGGGTTGAGTACGTTGTCCTTGCGGTGAAGCGGCTTAGCCGCTGCATGCTACCATATCAAGTTCCAACTTACATCTGTATTGCAAATCATAGCCCCACCTCGCAGTTTAGTTCCACCACAGATTGCATCATTTTTGCCGTACAAAATTTCCTCATCTAG 1644 0.5438 MVSLEESRSNSSRFPLARSYLYHSSVSSKTQRHTGRSMRTIRSNFFQDDNSSCSFTEKSTCVSENLTDSVVDLRLGELASRNNKSLKSSPAEEDFLDLSQAFSDFSACSSDISGELQRLATLPSPECVQKNNISGEVHPEQEPEPCTGFLQRESFSTEIIESISPEDLQPTVKICIDGLQSQSVAVKRSAAAKLRLLAKNRADNRVLIAESGAVPVLVPLLRCSDPWTQEHAVTALLNLSLHEDNKMLITNAGAVKSLIYVLKTGTETSKQNAACALLSLALVEENKSSIGASGAIPPLVSLLLNGSSRGKKDALTTLYKLCSVRQNKERAVSAGAVKPLVELVAEQGSGMAEKAMVVLNSLAGIQEGKDAIVEEGGIAALVEAIEDGSVKGKEFAVLTLLQLCVDSIRNRGFLVREGGIPPLVALSQTGSVRAKHKAETLLRYLRESRQEASTSSQHIACFSFSDTAQGITYARWTMERGVFEDSTGNGNGVGPWVEYVVLAVKRLSRCMLPYQVPTYICIANHSPTSQFSSTTDCIIFAVQNFLI 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01188 547 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 294 336 IPR000225 GO:0005515
Vimu2g01188 547 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 335 377 IPR000225 GO:0005515
Vimu2g01188 547 PANTHER U BOX DOMAIN-CONTAINING 117 446 - -
Vimu2g01188 547 SUPERFAMILY ARM repeat 169 448 IPR016024 -
Vimu2g01188 547 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 212 254 IPR000225 GO:0005515
Vimu2g01188 547 FunFam U-box domain-containing protein 4 158 310 - -
Vimu2g01188 547 Gene3D - 156 475 IPR011989 -
Vimu2g01188 547 SMART arm_5 283 323 IPR000225 GO:0005515
Vimu2g01188 547 SMART arm_5 406 447 IPR000225 GO:0005515
Vimu2g01188 547 SMART arm_5 242 282 IPR000225 GO:0005515
Vimu2g01188 547 SMART arm_5 324 364 IPR000225 GO:0005515
Vimu2g01188 547 SMART arm_5 365 405 IPR000225 GO:0005515
Vimu2g01188 547 SMART arm_5 201 241 IPR000225 GO:0005515
Vimu2g01188 547 Pfam Armadillo/beta-catenin-like repeat 203 240 IPR000225 GO:0005515
Vimu2g01188 547 Pfam Armadillo/beta-catenin-like repeat 285 323 IPR000225 GO:0005515
Vimu2g01188 547 FunFam U-box domain-containing protein 4 311 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01188 Vimu-Chr2 7955246 7958244 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01188 109 450 U-box Gene Family AT2G23140 44.729 5.82e-83 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01188 - - gmx:100806768 767.689