Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01180 ATGAAGATGACACCGCCGTCAATAACAACCGATCATTTTCCGCCGGCGCCACTAATGTCTGGCGCAGAAGAAGACTCCGCCAATCCATTGCGGTGGCCATTTCAGTTCTTCGTCCGTACGGTGTCAACGGGGTCCAGCATGGTGATGACTGGTTACCCGGAAGAGTCCGTGAAGTCTGTCCTTGCGAAGATCGCATGGGTGACGGGAATGCCGCTGAGAGAACTAAGAGTGATATACAAGGGAAAACAACTTCAATTGGAGAAGACTCTGATGGAGTCCGGCATCGAGAACGATTCCAATCTCAACATTGTTGGTCACTTGCGCAGCGGATTGTACCCCGCGGCGTCACGCCCTATCGACTACGTGCTATCCCTGCTTGCGCACGTGTTTACCAGCAACAAACGGAGCGCGTGTGCGGCATTGAAGACCGTGAAGGTTCTCACCATGCGCCATTTCAGCCTCCCTGGTTTTGTGGAGCTTTACGCAGCCTCTAATGCCCCCACCATGCTGGCTTCGATCTACCACTCGTCACGTGACGCTGATTCCGGGCAATTAGCTGCGTCTTGCATAATCAATTTCATGAGTTGCGTGAGCACGAAGAATTGGCAGGGGGGTTCTATTGGCGCGGTGATGGAGTTTTGCAAGCAGCTTAGAAAGTTTGGGCATGGAGACCGTGATTATTTGTATCTTTCGTGTAGAAACACTTTGGGGCATTTGTTGAATACAATTGGGGTTTCCCATGATTCTGGGAGTGTGAAAAACAGGGTTTCGCTTCGCGATGTTTTTTCCTTTGTTCCCGAGCTTGTGGATTCGTTGTTAGTGAGTTTAGATTATAGTAAACGGTGTGGTGACACCATCCTCTCCATCACGAGGCCTTCGCCGGCAGAAGTTTCGGATTTGATAATATTCTTGGCCCCTTTCAGGAATGCAATTATTCTGCAGAAACAATATTTGGGAGGTTTTGTGAGTGGTGATGATGAAAAATGTAGAGTGGAGAAGGATGATGATCAGTTGCTCGAGGAAGAAGTTGATTATCTTCGGCTTGTGTTTGTTCGGTTGTTGAGCAAAATGGATGAGTGTTTTCACGTCATGGCGGAATGCTTGGCGGGCAAGCAATCTGGTGGGAGGGGTTTTGTTCTCAATTACTCATGGTCTGAGTATCTTCGTATCTTGAAGGATTTGTATGATACTTCTAAGGTCTTTGATGGTGCAGAGGAAATGTTTTGGACAGTTTTGAGGTTTCATAAGAATATGCTTTCTGCGCTTGTTGTTGGGTTTGTGAAGAGAGGTGGTGATCATCGGTGGGTTCTTGATAACAAGAGTGTGACTAATTTTGAGTGTAGAAGGCACTTGGCATTGATTCTGTTCCCTGCTGTCGACGAAGACTTTGACATGCTTCATGAGATGCTTATTGACAGGTCTCAGGTACTGGCGGAGTCCTTTGAGTACATAGGACGAGCGAAGCCGGAGTCTCTGCGTTCTGGTCTGTTTATGGAATTCAAAAACGAGAAAGCTACAGGACCGGGTGTGTTACGGGAGTGGTTTGTCCTGGTGTGTCGAGAAATATTTGATTCACGACATGCTCTTTTTGTGTCTTGCCCGAATGACTGCAGGAGATTTTATCCGAATCCTGCATCTAAGGTACATCCTCGACACCTTGAGTACTTTAGGTTCGCTGGTCGGGTTATTGCATTGGCTTTGTTGGAAAGGGTACAAGTTGGTGTTGTTTTTGATCGTGTATTTTTCGTGCAATTGGCTGGAATTCGTGTTATCTTAGAAGATATACGGGATGCAGATCCTTGCTTGTATAGAAGCTGCAAGCAAATATTGGGGATGGATGCTGATTTTATTGACTCGGATGCATTAGGACTGACATTTGTTAGAGAGTTGGAGGAATTAGGATGCAGGGAAGTTGTCGATCTTTGTCCTGATGGGAAAAACGTTGTATTGAATAGTCAGAACAGGGAGCACTATGTTGATCTTCTCATACAGCATTATTTTGTAACATCCATATCTGAGCAGGTAGCAAACTTTGCCCAGGGTTTAGCTGATATTCTTTCCAGCTCAAAGCTTCAACAGTTCTTCCAATGTTTAGAGCTTGAAGATCTTGATTGGATGCTGTATGGGAGTGAAAATACAATCTCTATTGAAGATTGGAAGGCACATACCGTGTACAAGGGCTATAAAGAGTCTGACTGTCAGATATCCTGGTTTTGGGAGATTGTTGGGAGAATGTCAGCACAACAAAGGAGGGTTCTGCTTCTCTTTTGGACATCTGTGAAATATTTACCAGTTGAAGGATTCCGTGGTTTGTCTTCCCCTCTATCCATTTGCAGGACTGCAGAACCTAGCAATCGCCTGCCCTCATCTCACACATGTTTTCACCGTCTGTTTTTACCGGAGTATTCGTCTATTTCTGTTATGGAAGATCACTTTGGAGTCATCACTCAAGAACACATTGCTAGTAGTTTTGGTCTTAGTTAA 2484 0.4561 MKMTPPSITTDHFPPAPLMSGAEEDSANPLRWPFQFFVRTVSTGSSMVMTGYPEESVKSVLAKIAWVTGMPLRELRVIYKGKQLQLEKTLMESGIENDSNLNIVGHLRSGLYPAASRPIDYVLSLLAHVFTSNKRSACAALKTVKVLTMRHFSLPGFVELYAASNAPTMLASIYHSSRDADSGQLAASCIINFMSCVSTKNWQGGSIGAVMEFCKQLRKFGHGDRDYLYLSCRNTLGHLLNTIGVSHDSGSVKNRVSLRDVFSFVPELVDSLLVSLDYSKRCGDTILSITRPSPAEVSDLIIFLAPFRNAIILQKQYLGGFVSGDDEKCRVEKDDDQLLEEEVDYLRLVFVRLLSKMDECFHVMAECLAGKQSGGRGFVLNYSWSEYLRILKDLYDTSKVFDGAEEMFWTVLRFHKNMLSALVVGFVKRGGDHRWVLDNKSVTNFECRRHLALILFPAVDEDFDMLHEMLIDRSQVLAESFEYIGRAKPESLRSGLFMEFKNEKATGPGVLREWFVLVCREIFDSRHALFVSCPNDCRRFYPNPASKVHPRHLEYFRFAGRVIALALLERVQVGVVFDRVFFVQLAGIRVILEDIRDADPCLYRSCKQILGMDADFIDSDALGLTFVRELEELGCREVVDLCPDGKNVVLNSQNREHYVDLLIQHYFVTSISEQVANFAQGLADILSSSKLQQFFQCLELEDLDWMLYGSENTISIEDWKAHTVYKGYKESDCQISWFWEIVGRMSAQQRRVLLLFWTSVKYLPVEGFRGLSSPLSICRTAEPSNRLPSSHTCFHRLFLPEYSSISVMEDHFGVITQEHIASSFGLS 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01180 827 Gene3D - 33 112 - -
Vimu2g01180 827 Gene3D Hect, E3 ligase catalytic domains 470 702 - -
Vimu2g01180 827 Gene3D Hect, E3 ligase catalytic domain 710 825 - -
Vimu2g01180 827 SUPERFAMILY Ubiquitin-like 25 110 IPR029071 -
Vimu2g01180 827 MobiDBLite consensus disorder prediction 1 24 - -
Vimu2g01180 827 Pfam Ubiquitin family 37 107 IPR000626 GO:0005515
Vimu2g01180 827 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 74 824 - -
Vimu2g01180 827 ProSiteProfiles HECT domain profile. 488 827 IPR000569 GO:0004842
Vimu2g01180 827 FunFam E3 ubiquitin-protein ligase UPL5 711 826 - -
Vimu2g01180 827 SUPERFAMILY Hect, E3 ligase catalytic domain 467 810 IPR035983 GO:0004842
Vimu2g01180 827 CDD HECTc 467 810 IPR000569 GO:0004842
Vimu2g01180 827 ProSiteProfiles Ubiquitin domain profile. 34 110 IPR000626 GO:0005515
Vimu2g01180 827 Pfam HECT-domain (ubiquitin-transferase) 517 826 IPR000569 GO:0004842
Vimu2g01180 827 SMART hect_3 486 827 IPR000569 GO:0004842
Vimu2g01180 827 Gene3D Hect, E3 ligase catalytic domain 588 670 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01180 Vimu-Chr2 7864760 7870283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01180 35 134 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 32.000 2.88e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01180 - - var:108341618 966.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02000 7 17999325 18001751 Vimu2g01180 2 7864760 7870283 PCT