Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01166 ATGTTTGAAAATCAACACTCGGTACGAAGATTTGTCATGACTGTATGCTCTGACACTCTTCATATCATTGCTGTAAAATACACCTGTTTTCTAGGTTCAATGGCGGGGTCATGTTTCCACGGACTTAGGCTAAGGATGTCTAAGAGTAAACCTTTACCAGAGCCTTCATCTTCCTCCAAGTTACGGTTGGAGAGTGACACGGAGGAAAGGAAGAGATTTAATAGCACGGAATCGTGGTCCATGATATTGGACTCGATGGATGCATGGGAGGCTTCAAAGGAGGACGAGCAAGAGGAATGGACTGCAGACCTATCACAGCTTTTTATTGGTAACAGGTTTGCTTCTGGAGCTCACAGTCGAATTTACCGTGGAGTCTACAAGCAGAGAGCTGTTGCTGTGAAAATGGTGAAGATGCCATCCCAGGATGAGGAGAAAAAGGAATTACTAGAGGAGCAATTTAACTCTGAAGTGGCTTTGCTTTCACGTCTCTTCCATTTTAACATTGTGCAGTTCATTGCTGCATGTAAAAAACCGCCGGTGTACTGTATCATAACAGAATACATGTCACAAGGGAATCTAAGGATGTATCTGAACAACAAAGAGCCATACTCACTCTCAATGGAAACAATACTAAGGTTCGCTCTAGATATATCAAGGGGCATGGAGTACCTTCATTCACAAGGTGTGATTCACAGAGACTTGAAGTCAAGTAATTTGCTCCTCGACGATGATTTAAGGGTTAAGGTGGCGGATTTTGGCACATCTTGTCTTGAAACAAGATGCCGCAAAAGCAAAGGGAACTCGGGAACGTATCGTTGGATGGCACCAGAGATGCTTAAGGAAAAACCTTATACTCGAAAAGTTGATGTCTACAGTTTTGGTATTGTGCTTTGGGAGCTCACTACTTCTCTACTTCCTTTCCAAGGAATGACCCCAGTGCAAGCTGCTTTTGCTGTGGCTGAGAAGAATGAAAGGCCTCCTCTGCCAGCAAGTTGTGAACCAGGACTAGCACATCTGATAAAGCGTTGTTGGTCAGCAAACCCGTCGAAACGGCCAGATTTCAGTGACATTGTGTGTACGTTGGAGAAGTACGATGAGTGTATGAAGGAAGGCGTACCAATGAGCCATCATTCAGGGCTACTCAGCAGAAATGTAATTGTCGAACGCCTCAAAGGCTGTGTATCAATGACCTCCTCCATACCTGTCTATGCATGA 1215 0.4436 MFENQHSVRRFVMTVCSDTLHIIAVKYTCFLGSMAGSCFHGLRLRMSKSKPLPEPSSSSKLRLESDTEERKRFNSTESWSMILDSMDAWEASKEDEQEEWTADLSQLFIGNRFASGAHSRIYRGVYKQRAVAVKMVKMPSQDEEKKELLEEQFNSEVALLSRLFHFNIVQFIAACKKPPVYCIITEYMSQGNLRMYLNNKEPYSLSMETILRFALDISRGMEYLHSQGVIHRDLKSSNLLLDDDLRVKVADFGTSCLETRCRKSKGNSGTYRWMAPEMLKEKPYTRKVDVYSFGIVLWELTTSLLPFQGMTPVQAAFAVAEKNERPPLPASCEPGLAHLIKRCWSANPSKRPDFSDIVCTLEKYDECMKEGVPMSHHSGLLSRNVIVERLKGCVSMTSSIPVYA 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01166 404 CDD STKc_MAP3K-like 114 358 - -
Vimu2g01166 404 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672|GO:0006468
Vimu2g01166 404 Gene3D Transferase(Phosphotransferase) domain 1 190 383 - -
Vimu2g01166 404 Gene3D Phosphorylase Kinase; domain 1 96 189 - -
Vimu2g01166 404 SMART serkin_6 107 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g01166 404 Pfam Protein tyrosine and serine/threonine kinase 110 360 IPR001245 GO:0004672|GO:0006468
Vimu2g01166 404 ProSiteProfiles Protein kinase domain profile. 107 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g01166 404 MobiDBLite consensus disorder prediction 48 69 - -
Vimu2g01166 404 SUPERFAMILY Protein kinase-like (PK-like) 89 361 IPR011009 -
Vimu2g01166 404 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 100 364 - -
Vimu2g01166 404 PRINTS Tyrosine kinase catalytic domain signature 288 310 IPR001245 GO:0004672|GO:0006468
Vimu2g01166 404 PRINTS Tyrosine kinase catalytic domain signature 332 354 IPR001245 GO:0004672|GO:0006468
Vimu2g01166 404 PRINTS Tyrosine kinase catalytic domain signature 223 241 IPR001245 GO:0004672|GO:0006468
Vimu2g01166 404 PRINTS Tyrosine kinase catalytic domain signature 185 198 IPR001245 GO:0004672|GO:0006468
Vimu2g01166 404 PRINTS Tyrosine kinase catalytic domain signature 269 279 IPR001245 GO:0004672|GO:0006468
Vimu2g01166 404 FunFam Serine/threonine-protein kinase isoform 1 97 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01166 Vimu-Chr2 7753543 7757664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01166 34 395 MAP Kinase Kinase Kinase AT1G62400 75.532 0.0 586
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vimu2g01166 PK_Tyr_Ser-Thr 1.4e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01166 - - aprc:113845847 642.884