Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01157 ATGAGTCAACTCGGCGTCGTGTTGCAGGAATCGCTACAGAGGGAGCCCAGAACCATTCTCGGCTTGTTGAGGGATCAGATGGACGGTGTAGAAGCTGGGGCTCGCAGGAGGAAGACCTTCAAGGAACGCTTCGGATTCATAGGCATCGGCTGCTGTGGGGCCACATGGGGATTCCGTTCTCACGCGTTAAGTTTCACCCAAGGAGAACAACAGCAGCAGGCCAACCACCAGGAAACGGATCCCGGTCAAGGGTCGGCTTTGGACTGTGTGGACCACGGTGCAGCGGGTTCGGGTATGAACTTGGCGGCGGCGCTTGCGGCTGAGCGGCAAATCCGTGGGCCGCAGGAGGAGGCGGGGAGAGCTCCGGGGACGCCGTGGAGGGTGTCGCTGATGAGGCTGCTGGAAGAGAGCGAAGGAGGGGAGTCCGCGGCGGTGGAGAAGGAAAAGGAGGAGGAGAAGGGTGATGTTGTGGGGAATGATTCGATGTGCTGCGTGTGCATGGGAAGGAAGAAAGGCGCGGCCTTCATCCCATGTGGTCACACTTTTTGCAGAGTGTGTTCCAGGGAACTGTGGCTGAATCGAGGGTCCTGTCCCCTCTGCAATCGCTCCATCCTCGAGATCCTCGATATTTTCTAG 636 0.5896 MSQLGVVLQESLQREPRTILGLLRDQMDGVEAGARRRKTFKERFGFIGIGCCGATWGFRSHALSFTQGEQQQQANHQETDPGQGSALDCVDHGAAGSGMNLAAALAAERQIRGPQEEAGRAPGTPWRVSLMRLLEESEGGESAAVEKEKEEEKGDVVGNDSMCCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRSILEILDIF 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01157 211 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 139 211 IPR013083 -
Vimu2g01157 211 ProSiteProfiles Zinc finger RING-type profile. 163 201 IPR001841 -
Vimu2g01157 211 Pfam Zinc finger, C3HC4 type (RING finger) 160 205 - -
Vimu2g01157 211 SMART ring_2 163 200 IPR001841 -
Vimu2g01157 211 CDD RING-HC 163 200 - -
Vimu2g01157 211 SUPERFAMILY RING/U-box 156 208 - -
Vimu2g01157 211 PANTHER OS01G0917900 PROTEIN 7 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01157 Vimu-Chr2 7658244 7658879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01157 19 211 C3H Transcription Factor Family AT4G22250 56.566 4.64e-64 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01157 - - pvu:PHAVU_006G145000g 302.367
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01157 2 7658244 7658879 Vimu2g01157 2 7658244 7658879 ECH
Vimu7g02023 7 18128471 18129058 Vimu2g01157 2 7658244 7658879 PCT