Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01147 ATGGAGCGTTTGGCTAGATCAGCTCGAGCGTCGCGTTGGTATTGGCGTTCGTTTTCCTCTTTTCAAACCCTAACTTCTCGATCCTCACGTCTTTCTACACATCCCAAATTTGCGTCTTCTTGGTTTTCTTCTTCCGACGTTTCGATGTCCAGAGTCTTGCCCGAGGATTATTCATGGCTTCCGGTCTTCTTTGCTGGTGTTTTTGGATCTGGATTGGTGGGAGTGGCTTATGCGGATAATGCTACTGTGGATGTCCAAGAAAGAGCCAAGAAGGAACGCGAGCGAATTGAGGAGTTGATTAGAAGTAGAGGAATTCGATACGGTTCTTATCCTTCATTCTCTGTTGCCGTTAAAGGCCAAAAGGTCAGTGTTAAGTTTCAAATTCCTCATGGTTGTGATATTTCACAACTTATTGCAAATCTTACTGCACATCTTGGAACTAAGGCTGAAGCCCATGGAGGTGGTTCAGACATGTTATTACGAGCTTGGAACAGCCCAGTTGCTTGGCAACTTACCCTTTCTCATCCATCAGAACAAAAACATATTCCAGGGGATGACATGTCATCGAAAGATATAAATGCAGAAGATACAGATCTATGTATACTCATATTTCATTCTCTCGTTGGCTCAGACAAGGCTGAAATTGAATTCATTAAGCAAGGGGAATTAAGTCCTGAAGAGGTTGATGCTTTCATCTCTGTTTTACAATTAGCTGGTAACAAGTTGGGACAAAAAAGCACCCTGGAAAGAAAACCAAAGGAAGAGACTGAAAAGGTGCCATCTGTAGATAAATCTATTTCTGATCTTGAGGGTATGGGAGTGAGAATTTATGGACTTGATGAACCCGTAGGTAGATCGAAAGATGCTGAGATATCATGGGACAACATTGCTGGTTATGAACATCAAAAACGATTAATAGAAGATACAATACTATTGGCATTGCATAGTCCTGAAGTATATGATGATATTGCCCGAGGGACTCGTCATAAGACTGTCATGGGGAAAGCTGATGGAGGGACTGGTGGCAGCAAGGCTGAACTGAAAGCAAAGAGGAGGAAACTGGTGAAGGAGATGATTGAAATGAAGAACAAAGCTGATGATCGTACAGGGAAAACGTCCTGTGCTCGTGTTATTGCCAATCAAGCGAGTTACTGTTTGGGCACAGGGGAAGAGCTGGCCTTCTTGCCAGCTGTAATTCTGGGGAGTGAACTAAAATCGGTGAACTTGATTTGGCAGGGTGTCCCTTTACTATATGTTCCACTTGAGGCTATAATGTCTGAGTTCTATGGTAAAAGTGAACGTCTTCTAGGGAAAGTGTTTTCGCTTGCAAACAATCTTCCAAATGGTGCTATTATATTTCTGGATGAGATTGATTCTTTTGCTGCTGCACGTGACAATGAAATGCATGAAGCGACCCGTAGAATATTGTCAGTCTTGTTGAGACAGATAGATGGCTTTGAGCAGGATAAGAAAGTAGTAGTCATTGCTGCCACAAATAGAAAGGAAGACCTTGATCCCGCATTAATCAGTCGGTTTGATAGTATGATCGCTTTTGGCTTACCTGATCATCGGAATCGTCAGGAAATAGCATCCAAATATGCAAAGCACCTGTCCAAACCCGAACTAGAGGAATTTGCAAGAGTTACTGAAGATATGTCTGGAAGAGATATTAGAGATGTTTGCCAGCAAGCAGAACGATCGTGGGCGTCAAAGATTATTCGAGGACAAGTGCCTAAAGAGGGGGAAAAAGCGAAGCTTCCAGCTTTGCAAGAATACATAGAATGCGCCGAGAGTCGACAGGAGGCGCTGCGTAGTGCTGCCGCAAACAGAAAGCTCCCAACCTCGTCCCACCCCAAGATACTATACTAA 1869 0.4339 MERLARSARASRWYWRSFSSFQTLTSRSSRLSTHPKFASSWFSSSDVSMSRVLPEDYSWLPVFFAGVFGSGLVGVAYADNATVDVQERAKKERERIEELIRSRGIRYGSYPSFSVAVKGQKVSVKFQIPHGCDISQLIANLTAHLGTKAEAHGGGSDMLLRAWNSPVAWQLTLSHPSEQKHIPGDDMSSKDINAEDTDLCILIFHSLVGSDKAEIEFIKQGELSPEEVDAFISVLQLAGNKLGQKSTLERKPKEETEKVPSVDKSISDLEGMGVRIYGLDEPVGRSKDAEISWDNIAGYEHQKRLIEDTILLALHSPEVYDDIARGTRHKTVMGKADGGTGGSKAELKAKRRKLVKEMIEMKNKADDRTGKTSCARVIANQASYCLGTGEELAFLPAVILGSELKSVNLIWQGVPLLYVPLEAIMSEFYGKSERLLGKVFSLANNLPNGAIIFLDEIDSFAAARDNEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKEDLDPALISRFDSMIAFGLPDHRNRQEIASKYAKHLSKPELEEFARVTEDMSGRDIRDVCQQAERSWASKIIRGQVPKEGEKAKLPALQEYIECAESRQEALRSAAANRKLPTSSHPKILY 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01147 622 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 285 566 - -
Vimu2g01147 622 SMART AAA_5 365 522 IPR003593 GO:0016887
Vimu2g01147 622 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 369 568 IPR027417 -
Vimu2g01147 622 Gene3D - 284 541 IPR027417 -
Vimu2g01147 622 ProSitePatterns AAA-protein family signature. 492 511 IPR003960 GO:0005524|GO:0016887
Vimu2g01147 622 Pfam ATPase family associated with various cellular activities (AAA) 369 519 IPR003959 GO:0005524|GO:0016887
Vimu2g01147 622 Coils Coil 344 364 - -
Vimu2g01147 622 CDD RecA-like_protease 369 518 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01147 Vimu-Chr2 7577864 7583970 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01147 413 587 Calmodulin-binding Proteins AT3G56690 32.597 1.60e-18 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01147 - - var:108341616 906.36