Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01143 ATGGAGGGTAGTAGTAGTTCTAATGGCACTTCTTATTTGTTGGCTTTTGGAGAAAACAGTGGTGGGCTATGCCCAATGACGATGATGCCTTTGGTGACTTCCCATCATGTTGGTCATCATCCAATAAATCCTAATCCTAGTAATAATACCAATAATAATGCAAACACAAACTGTCTCTTCATTCCCAACTGCAGTAACAGTGGAACTCCTTCTATCATGCTCGACAATAACCACAACAACAACGATGATAACAACAACACTGGGGTAGGGTACTATTTCATGGAGAGTGGCCATCCCAACCACCGCAGCAACAACAATGGAAGCTCCTCCTCCTCCTCCTCCTCTTCTGCTGCCAAGGCCAAGATCATGGCCCATCCTCACTATCACCGTCTCTTGGCAGCTTACGTCAATTGTCAGAAGGTTGGAGCCCCGCCTGAAGTGGTGGCTAGGTTAGAGGAAGCCTGTGCTTCTACGGTGACAATGGCCGGAGATGCAGCTGGATCGAGCTGCATAGGTGAGGATCCAGCTCTAGATCAGTTCATGGAAGCTTACTGCGAGATGCTGACCAAGTACGAGCAAGAACTCTCCAAACCCTTAAAAGAAGCCATGCTCTTCCTTCAAAGGGTTGAGTGTCAGTTCAAAAATCTAACAGTTTCTTCCTCCGACTTCGGTTGTAATGAGGGTGGTGATAGGAATGGATCATCTGAAGAAGATGTTGATCTACAGAGCATGATAGATCCCCAGGCAGAGGACAGGGAATTAAAGGGTCAGCTTCTGCGGAAGTACAGTGGATACTTGGGCAGTCTGAAGCAGGAGTTCATGAAAAAGAGGAAAAAGGGAAAGCTACCTAAAGAAGCAAGGCAACAATTGCTTGAATGGTGGAGCAGACATTACAAATGGCCTTATCCATCCGAGTCACAGAAGCTGGCTCTTGCAGAGTCGACAGGTCTGGATCAGAAGCAAATCAACAACTGGTTTATTAATCAAAGGAAACGACACTGGAAGCCTTCAGAGGACATGCAGTTTGTGGTGATGGATCCAAGCCATCCACATTACTACGTCGACACTGTTATGGCTAATCCATTTCCCATGGATCTCTCCCATCCCATGCTCTAG 1116 0.4668 MEGSSSSNGTSYLLAFGENSGGLCPMTMMPLVTSHHVGHHPINPNPSNNTNNNANTNCLFIPNCSNSGTPSIMLDNNHNNNDDNNNTGVGYYFMESGHPNHRSNNNGSSSSSSSSSAAKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASTVTMAGDAAGSSCIGEDPALDQFMEAYCEMLTKYEQELSKPLKEAMLFLQRVECQFKNLTVSSSDFGCNEGGDRNGSSEEDVDLQSMIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDPSHPHYYVDTVMANPFPMDLSHPML 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01143 371 Pfam KNOX1 domain 119 156 IPR005540 GO:0003677|GO:0005634
Vimu2g01143 371 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 95 342 - -
Vimu2g01143 371 SUPERFAMILY Homeodomain-like 275 351 IPR009057 -
Vimu2g01143 371 ProSitePatterns 'Homeobox' domain signature. 311 334 IPR017970 GO:0000981|GO:0006355
Vimu2g01143 371 MobiDBLite consensus disorder prediction 98 119 - -
Vimu2g01143 371 MobiDBLite consensus disorder prediction 78 119 - -
Vimu2g01143 371 Pfam KNOX2 domain 170 217 IPR005541 GO:0003677|GO:0005634
Vimu2g01143 371 ProSiteProfiles 'Homeobox' domain profile. 273 336 IPR001356 GO:0003677
Vimu2g01143 371 SMART KNOX2_2 167 218 IPR005541 GO:0003677|GO:0005634
Vimu2g01143 371 SMART KNOX1_2 116 160 IPR005540 GO:0003677|GO:0005634
Vimu2g01143 371 SMART HOX_1 275 340 IPR001356 GO:0003677
Vimu2g01143 371 FunFam Homeobox protein knotted-1-like 2 278 340 - -
Vimu2g01143 371 CDD homeodomain 285 337 IPR001356 GO:0003677
Vimu2g01143 371 SMART ELK_2 253 274 IPR005539 GO:0003677
Vimu2g01143 371 Pfam ELK domain 253 274 IPR005539 GO:0003677
Vimu2g01143 371 ProSiteProfiles ELK domain profile. 253 273 IPR005539 GO:0003677
Vimu2g01143 371 Gene3D - 278 340 - -
Vimu2g01143 371 Pfam Homeobox KN domain 293 332 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01143 Vimu-Chr2 7545021 7549921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01143 91 371 Homeobox Transcription Factor Family AT1G62360 75.087 1.41e-132 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vimu2g01143 KNOX2 6.6e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01143 - - gmx:100805837 637.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01143 2 7545021 7549921 Vimu2g01143 2 7545021 7549921 ECH
Vimu7g02027 7 18165653 18169412 Vimu2g01143 2 7545021 7549921 PCT