LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu2g01139	ATGGCCCTGCCTTGTACAACCAGTCGCGATCTGAAACTCAACTACTACGGTACTACTTCTACTACTGCTACCCCTGTTTTCCTCTTCTCCTTTGACATCTCTTTCGCCTCCATGTCATGTGATGGGAACTGGGGAGTGATTGGTCTTGGGGAAAAAGTTTTGATTTTGCGTCGAGGGGCATTCGGTTTTGATTTTGTTTTTTGGACTCTGGGTTCAGAGGACATACGTGTTCAAGCTCTCGAGGTTATGTACAATGCGTTGAATGGTTCAACTCAGTTAACGGGTTGGAGAATCGGTGGTGGTGATCCATGTGGAGAGTCATGGAAAGGGGTAACTTGTGAAGGTTCAGCCGTTGTTTCCATTGAGCTCTCAGGATTAGGACTCGATGGGACTCTGGGGTACCTGCTTTCGGACCTTATGTCACTCAGAAAGCTTGACTTGAGTGACAACAAGATCCACGATACAATTCCCTACCAGTTGCCGCCAAATCTTACAAGCCTGAATCTTGCAAGAAACAATTTATCTGGAAATCTTCCTTATTCCTTTTCTGCTATGGTTTCTCTCAATTATTTGAATTTAAGCAATAATGCACTGTCCATGGCAGTTGGCGATGTTTTTGCTAATCTTTCAGATCTAGATATCCTGGATCTATCATTCAATAACTTCTCGGGGGATCTTCCTCCTTCATTTGGTTCACTGGCCAATCTTTCTTCTCTTTTCTTGCAGAAAAACCAGTTGACTGGTTCTCTTAGTGTTCTCGTTGGTTTGCCTTTGGATACTTTAAATGTTGCGAACAATAATTTCAGTGGATGGCTACCTCGTGAAATTACTTCCATACATCTTTTCATATATGATGGAAATTCATTTGAGAACCCTCCTGCTCCTCTTCCACCACCAGTAACTTCTCCTCCTCCCAGTGGATCCCGTAATCATCATCACTCTGGATCTGGCTCACATAATAAAACACAAGCCTCTGATAATGAAAATTCTGATGGCCATACGGGTTTGAAAGTGGGGGCTGTTGTGGGCATTGTGTTAGGTTCCATAGTGGTGGCTGCCATTGTGCTGCTTGCTTTTGTTTTCTGCATCCAAAAGCAAAAGGGGAAGAAAAAGGGTGCAAGGAATTTTAGTGGGAGCCTTCCTCGTGGAGTTATTAATGTAACTCCTCAGATGCAAGAACAGAGGGTAAAGAGCGCTGCTGTTGTTACAGACCTGAAGCCTCGTCCAGCAGAAAATGTATCAGTTGAGAGATTACCTACTAAAAGTGGATCAGTACGGCATATGAAGTCCCCTATAACTTCAACGTCGTACACAATTGCTTCTCTCCAAAGTGCTACAAATAGCTTTAGTCAAGAATTTATAATTGGTGAAGGTTCTCTTGGCCGTGTTTACAAGGCTGATTTCCCAAATGGGAAGGAAATGGCTATCAAGAAAATCGACAACTCTGCACTGTCATTACAGGAGGAAGACAATTTTCTTGAAGCTGTTTCAAATATGTCACGCCTGCGGCACCCGAACATTGTGACATTGACTGGATATTGTGCTGAACATGGCCAACGACTTCTAGTTTATGAGTATATAGGAAATGGAAATCTGCATGACATGCTCCATTTTGCTGAAGAAAACAGCGGCAAGGCTTTGTCTTGGAATTCTCGTGTTCGCATAGCACTTGGCACAGCCCGGGCATTAGAGTACTTGCATGAAGTGTGTTTGCCCTCTGTTGTGCATAGAAATTTCAAATCAGCAAATATATTACTTGATGAGGAGCTAAATCCTCACCTGTCTGACTGCGGTTTAGCTGCTTTGACACCAAACACAGAGCGGCAGGTATCGACTCAGATGGTCGGTTCATTTGGTTACAGTGCTCCTGAGTTTGCATTATCAGGAGTATACACTGTAAAAAGTGATGTTTACAGCTTTGGGGTGGTTATGCTGGAATTGTTGACTGGTCGGAAGCCGCTAGACAGTTCACGAATTCGATCAGAGCAGTCACTTGTGAGGTGGGCTACACCCCAACTCCATGATATAGATGCCTTGGCAAAAATGGTGGATCCTACTTTGAATGGCATGTATCCTGCAAAGTCACTGTCACGCTTTGCTGATATCATTGCCCTCTGTGTTCAGCCGGAACCTGAATTTCGACCTCCGATGTCTGAGGTGGTGCAAGCGTTAGTCCGGCTAGTGCAAAGAGCAAGTGTGGTTAAAAGACGACCCAGTGATGAATCTGGCATTGGTCACAAGACCCCAGAACATGAGGCCATAGACATGTCATTTTAA	2277	0.4418	MALPCTTSRDLKLNYYGTTSTTATPVFLFSFDISFASMSCDGNWGVIGLGEKVLILRRGAFGFDFVFWTLGSEDIRVQALEVMYNALNGSTQLTGWRIGGGDPCGESWKGVTCEGSAVVSIELSGLGLDGTLGYLLSDLMSLRKLDLSDNKIHDTIPYQLPPNLTSLNLARNNLSGNLPYSFSAMVSLNYLNLSNNALSMAVGDVFANLSDLDILDLSFNNFSGDLPPSFGSLANLSSLFLQKNQLTGSLSVLVGLPLDTLNVANNNFSGWLPREITSIHLFIYDGNSFENPPAPLPPPVTSPPPSGSRNHHHSGSGSHNKTQASDNENSDGHTGLKVGAVVGIVLGSIVVAAIVLLAFVFCIQKQKGKKKGARNFSGSLPRGVINVTPQMQEQRVKSAAVVTDLKPRPAENVSVERLPTKSGSVRHMKSPITSTSYTIASLQSATNSFSQEFIIGEGSLGRVYKADFPNGKEMAIKKIDNSALSLQEEDNFLEAVSNMSRLRHPNIVTLTGYCAEHGQRLLVYEYIGNGNLHDMLHFAEENSGKALSWNSRVRIALGTARALEYLHEVCLPSVVHRNFKSANILLDEELNPHLSDCGLAALTPNTERQVSTQMVGSFGYSAPEFALSGVYTVKSDVYSFGVVMLELLTGRKPLDSSRIRSEQSLVRWATPQLHDIDALAKMVDPTLNGMYPAKSLSRFADIIALCVQPEPEFRPPMSEVVQALVRLVQRASVVKRRPSDESGIGHKTPEHEAIDMSF	758

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu2g01139	758	PANTHER	LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1	78	728	IPR046959	-
	Vimu2g01139	758	Pfam	Protein kinase domain	452	722	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu2g01139	758	Gene3D	Transferase(Phosphotransferase) domain 1	527	746	-	-
	Vimu2g01139	758	Pfam	Leucine rich repeat	162	222	IPR001611	GO:0005515
	Vimu2g01139	758	SUPERFAMILY	Protein kinase-like (PK-like)	424	724	IPR011009	-
	Vimu2g01139	758	SMART	LRR_typ_2	185	208	IPR003591	-
	Vimu2g01139	758	SMART	LRR_typ_2	209	232	IPR003591	-
	Vimu2g01139	758	SMART	LRR_typ_2	233	256	IPR003591	-
	Vimu2g01139	758	SMART	LRR_typ_2	139	167	IPR003591	-
	Vimu2g01139	758	CDD	STKc_IRAK	455	727	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu2g01139	Vimu-Chr2	7520762	7527071	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu2g01139	185	758	Strubbelig Receptor Gene Family	AT4G22130	69.217	0.0	790

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-V	Vimu2g01139		Pkinase	1.2e-44	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu2g01139	-		-	gmx:100781455	1157.51

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