Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01139 ATGGCCCTGCCTTGTACAACCAGTCGCGATCTGAAACTCAACTACTACGGTACTACTTCTACTACTGCTACCCCTGTTTTCCTCTTCTCCTTTGACATCTCTTTCGCCTCCATGTCATGTGATGGGAACTGGGGAGTGATTGGTCTTGGGGAAAAAGTTTTGATTTTGCGTCGAGGGGCATTCGGTTTTGATTTTGTTTTTTGGACTCTGGGTTCAGAGGACATACGTGTTCAAGCTCTCGAGGTTATGTACAATGCGTTGAATGGTTCAACTCAGTTAACGGGTTGGAGAATCGGTGGTGGTGATCCATGTGGAGAGTCATGGAAAGGGGTAACTTGTGAAGGTTCAGCCGTTGTTTCCATTGAGCTCTCAGGATTAGGACTCGATGGGACTCTGGGGTACCTGCTTTCGGACCTTATGTCACTCAGAAAGCTTGACTTGAGTGACAACAAGATCCACGATACAATTCCCTACCAGTTGCCGCCAAATCTTACAAGCCTGAATCTTGCAAGAAACAATTTATCTGGAAATCTTCCTTATTCCTTTTCTGCTATGGTTTCTCTCAATTATTTGAATTTAAGCAATAATGCACTGTCCATGGCAGTTGGCGATGTTTTTGCTAATCTTTCAGATCTAGATATCCTGGATCTATCATTCAATAACTTCTCGGGGGATCTTCCTCCTTCATTTGGTTCACTGGCCAATCTTTCTTCTCTTTTCTTGCAGAAAAACCAGTTGACTGGTTCTCTTAGTGTTCTCGTTGGTTTGCCTTTGGATACTTTAAATGTTGCGAACAATAATTTCAGTGGATGGCTACCTCGTGAAATTACTTCCATACATCTTTTCATATATGATGGAAATTCATTTGAGAACCCTCCTGCTCCTCTTCCACCACCAGTAACTTCTCCTCCTCCCAGTGGATCCCGTAATCATCATCACTCTGGATCTGGCTCACATAATAAAACACAAGCCTCTGATAATGAAAATTCTGATGGCCATACGGGTTTGAAAGTGGGGGCTGTTGTGGGCATTGTGTTAGGTTCCATAGTGGTGGCTGCCATTGTGCTGCTTGCTTTTGTTTTCTGCATCCAAAAGCAAAAGGGGAAGAAAAAGGGTGCAAGGAATTTTAGTGGGAGCCTTCCTCGTGGAGTTATTAATGTAACTCCTCAGATGCAAGAACAGAGGGTAAAGAGCGCTGCTGTTGTTACAGACCTGAAGCCTCGTCCAGCAGAAAATGTATCAGTTGAGAGATTACCTACTAAAAGTGGATCAGTACGGCATATGAAGTCCCCTATAACTTCAACGTCGTACACAATTGCTTCTCTCCAAAGTGCTACAAATAGCTTTAGTCAAGAATTTATAATTGGTGAAGGTTCTCTTGGCCGTGTTTACAAGGCTGATTTCCCAAATGGGAAGGAAATGGCTATCAAGAAAATCGACAACTCTGCACTGTCATTACAGGAGGAAGACAATTTTCTTGAAGCTGTTTCAAATATGTCACGCCTGCGGCACCCGAACATTGTGACATTGACTGGATATTGTGCTGAACATGGCCAACGACTTCTAGTTTATGAGTATATAGGAAATGGAAATCTGCATGACATGCTCCATTTTGCTGAAGAAAACAGCGGCAAGGCTTTGTCTTGGAATTCTCGTGTTCGCATAGCACTTGGCACAGCCCGGGCATTAGAGTACTTGCATGAAGTGTGTTTGCCCTCTGTTGTGCATAGAAATTTCAAATCAGCAAATATATTACTTGATGAGGAGCTAAATCCTCACCTGTCTGACTGCGGTTTAGCTGCTTTGACACCAAACACAGAGCGGCAGGTATCGACTCAGATGGTCGGTTCATTTGGTTACAGTGCTCCTGAGTTTGCATTATCAGGAGTATACACTGTAAAAAGTGATGTTTACAGCTTTGGGGTGGTTATGCTGGAATTGTTGACTGGTCGGAAGCCGCTAGACAGTTCACGAATTCGATCAGAGCAGTCACTTGTGAGGTGGGCTACACCCCAACTCCATGATATAGATGCCTTGGCAAAAATGGTGGATCCTACTTTGAATGGCATGTATCCTGCAAAGTCACTGTCACGCTTTGCTGATATCATTGCCCTCTGTGTTCAGCCGGAACCTGAATTTCGACCTCCGATGTCTGAGGTGGTGCAAGCGTTAGTCCGGCTAGTGCAAAGAGCAAGTGTGGTTAAAAGACGACCCAGTGATGAATCTGGCATTGGTCACAAGACCCCAGAACATGAGGCCATAGACATGTCATTTTAA 2277 0.4418 MALPCTTSRDLKLNYYGTTSTTATPVFLFSFDISFASMSCDGNWGVIGLGEKVLILRRGAFGFDFVFWTLGSEDIRVQALEVMYNALNGSTQLTGWRIGGGDPCGESWKGVTCEGSAVVSIELSGLGLDGTLGYLLSDLMSLRKLDLSDNKIHDTIPYQLPPNLTSLNLARNNLSGNLPYSFSAMVSLNYLNLSNNALSMAVGDVFANLSDLDILDLSFNNFSGDLPPSFGSLANLSSLFLQKNQLTGSLSVLVGLPLDTLNVANNNFSGWLPREITSIHLFIYDGNSFENPPAPLPPPVTSPPPSGSRNHHHSGSGSHNKTQASDNENSDGHTGLKVGAVVGIVLGSIVVAAIVLLAFVFCIQKQKGKKKGARNFSGSLPRGVINVTPQMQEQRVKSAAVVTDLKPRPAENVSVERLPTKSGSVRHMKSPITSTSYTIASLQSATNSFSQEFIIGEGSLGRVYKADFPNGKEMAIKKIDNSALSLQEEDNFLEAVSNMSRLRHPNIVTLTGYCAEHGQRLLVYEYIGNGNLHDMLHFAEENSGKALSWNSRVRIALGTARALEYLHEVCLPSVVHRNFKSANILLDEELNPHLSDCGLAALTPNTERQVSTQMVGSFGYSAPEFALSGVYTVKSDVYSFGVVMLELLTGRKPLDSSRIRSEQSLVRWATPQLHDIDALAKMVDPTLNGMYPAKSLSRFADIIALCVQPEPEFRPPMSEVVQALVRLVQRASVVKRRPSDESGIGHKTPEHEAIDMSF 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01139 758 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 78 728 IPR046959 -
Vimu2g01139 758 Pfam Protein kinase domain 452 722 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g01139 758 Gene3D Transferase(Phosphotransferase) domain 1 527 746 - -
Vimu2g01139 758 Pfam Leucine rich repeat 162 222 IPR001611 GO:0005515
Vimu2g01139 758 SUPERFAMILY Protein kinase-like (PK-like) 424 724 IPR011009 -
Vimu2g01139 758 SMART LRR_typ_2 185 208 IPR003591 -
Vimu2g01139 758 SMART LRR_typ_2 209 232 IPR003591 -
Vimu2g01139 758 SMART LRR_typ_2 233 256 IPR003591 -
Vimu2g01139 758 SMART LRR_typ_2 139 167 IPR003591 -
Vimu2g01139 758 CDD STKc_IRAK 455 727 - -
Vimu2g01139 758 ProSiteProfiles Leucine-rich repeat profile. 141 162 IPR001611 GO:0005515
Vimu2g01139 758 SUPERFAMILY L domain-like 99 278 - -
Vimu2g01139 758 Pfam Leucine rich repeat N-terminal domain 78 113 IPR013210 -
Vimu2g01139 758 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 414 526 - -
Vimu2g01139 758 ProSiteProfiles Protein kinase domain profile. 449 727 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g01139 758 MobiDBLite consensus disorder prediction 306 331 - -
Vimu2g01139 758 Gene3D Ribonuclease Inhibitor 75 320 IPR032675 -
Vimu2g01139 758 Gene3D Phosphorylase Kinase; domain 1 411 526 - -
Vimu2g01139 758 MobiDBLite consensus disorder prediction 293 331 - -
Vimu2g01139 758 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 73 300 - -
Vimu2g01139 758 MobiDBLite consensus disorder prediction 738 758 - -
Vimu2g01139 758 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 527 738 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01139 Vimu-Chr2 7520762 7527071 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01139 185 758 Strubbelig Receptor Gene Family AT4G22130 69.217 0.0 790
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Vimu2g01139 Pkinase 1.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01139 - - gmx:100781455 1157.51