Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01136 ATGACCGCACATTCAACCACGAAACCAAAGCCACACCATCTTTTCCTTCTCTTAATTCAGTTCTTAATTTCCACAAGAGTCAAAGGTGACTGTGATTCTGGTTGCAACCTTGCTCTAGCTTCCTACTACATACCGGAGCGCACCAACCTCACATTCATCAGCAATCTTTTTGGAAAGCCCACATCGGAGATTCTCAAGTACAACCCAAGCGTCAAAGACGCCAACGTCATTCATAGCCAAACGCGGATCAACGTGCCATTCTCCTGTGACTGCTTAAACGGGCAGTTTTTGGGGCACACTTTCTCGTACCGGATCCAACACGGGAACACCTACCAGATTGTTGCGGATATCAGTTTCTCCAACCTCACCACCGAGGATTGGGTGAGAAGGGTCAACAGTTACCCGTCCATTCACATTCCCGACAACGTCAACATCAATGTCACCATCAACTGCTCCTGCGGAAACCGACACGTGTCCAAGCACTATGGGCTGTTTTTGACGTACCCGCTTCGGCTGGGTGATGACTTGCAAAAGGTTGGGGCGGAATCCGGTGTGCCGGCGGAGCTGCTGGTACGCTACAACCCCACCTCAAATTTCAGTTCTGGGAGTGGACTCGTGTTCGTGCCGGCTAAAGATGAAAATGGAAACTTTCCACCTATGAAGCTGAGATCAGGAATATCTGGTAGAGCCATTGCTGGCATATCGGTTGGAGGAGCTGCTGGGGTCTTAATTTTGGCACTTGTTCTATATGTTGGACTACACAGAAGAAGAAAAGTGGCTGAGGTATCCCTTCTCACTGTCCCAGGAGCATCTGAAGATCACTGTAGTCCACTCTATCATGGTATTGGTTTGGGAAGCAGCTTGGACAAGGCATCGGAATCTTCTGTTGTTGCTTCTCCAAGGATGACAGGGATTACAGTGGACAAGTCAGTGGAGTTCTCATATGGGGAGCTAGACAAGGCCACTGATGGCTTTAGTGTGGCTAATATAATTGGTCAAGGTGGCTTTGGATCTGTTTACTATGCTGAGCTTCGGAATGAGAAAGCTGCAATTAAAAAGATGGATATGCAAGCATCAAATGAATTCCTTTCTGAACTCAAGGTTCTAACACATGTCCATCACTTGAACCTGGTGCGGTTAATAGGATATTGTGTTGAGGGCTCCTTATTTCTGGTTTATGAGTATATTGAGAACGGCAATTTAAGCCAACATTTGCGAGGCTCAGGGAGGGATCCGTTAACATGGGGAGCTAGAGTGCAAATTGCTCTTGATGCAGCAAGAGGATTGGAATACATCCATGAGCATACAGTTCCTGTCTACATCCACAGAGATATTAAATCAGCAAACATCTTGATAGACAAAAACTTTCGTGCAAAGGTTAATAAATAG 1389 0.4644 MTAHSTTKPKPHHLFLLLIQFLISTRVKGDCDSGCNLALASYYIPERTNLTFISNLFGKPTSEILKYNPSVKDANVIHSQTRINVPFSCDCLNGQFLGHTFSYRIQHGNTYQIVADISFSNLTTEDWVRRVNSYPSIHIPDNVNINVTINCSCGNRHVSKHYGLFLTYPLRLGDDLQKVGAESGVPAELLVRYNPTSNFSSGSGLVFVPAKDENGNFPPMKLRSGISGRAIAGISVGGAAGVLILALVLYVGLHRRRKVAEVSLLTVPGASEDHCSPLYHGIGLGSSLDKASESSVVASPRMTGITVDKSVEFSYGELDKATDGFSVANIIGQGGFGSVYYAELRNEKAAIKKMDMQASNEFLSELKVLTHVHHLNLVRLIGYCVEGSLFLVYEYIENGNLSQHLRGSGRDPLTWGARVQIALDAARGLEYIHEHTVPVYIHRDIKSANILIDKNFRAKVNK 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01136 462 Pfam Protein tyrosine and serine/threonine kinase 328 460 IPR001245 GO:0004672|GO:0006468
Vimu2g01136 462 SUPERFAMILY Protein kinase-like (PK-like) 305 460 IPR011009 -
Vimu2g01136 462 Gene3D Transferase(Phosphotransferase) domain 1 396 461 - -
Vimu2g01136 462 SMART serkin_6 325 462 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g01136 462 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 17 460 IPR044812 GO:0019199|GO:0045087
Vimu2g01136 462 ProSiteProfiles Protein kinase domain profile. 325 462 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g01136 462 ProSitePatterns Serine/Threonine protein kinases active-site signature. 440 452 IPR008271 GO:0004672|GO:0006468
Vimu2g01136 462 Gene3D Phosphorylase Kinase; domain 1 297 395 - -
Vimu2g01136 462 ProSitePatterns Protein kinases ATP-binding region signature. 331 353 IPR017441 GO:0005524
Vimu2g01136 462 FunFam LysM receptor kinase 2 304 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01136 Vimu-Chr2 7497813 7504371 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01136 16 460 Receptor kinase-like Gene Family AT3G21630 51.974 2.79e-161 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vimu2g01136 PK_Tyr_Ser-Thr 1.9e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01136 - K13429 gmx:100802308 759.214