Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01135 ATGTATTGTTTGTGGTGCATCAAGAGATGGTATCCCAATCTTACAGTATCAGACATTTCACACGAGTGTCCCTTTTGCCGAAACAATTGCAATTGCAGTGTTTGCTTACTCTCAAGAGGAACCATTAAGACATCTAACAGCAAAATCACAGACCACGAAAGGGTTCAGCATCTCCAATACATGATTAACTTACTCACTCCATTTATACAACACATTTGTGAAGAACAAAGTCAAGAGCTCGAGATTGAAGCTAAAATACAAGAAAAATCAAGTGCTGAGATTGAGATACCACAAACATCTTGTGAGAATGAACGTATCTACTGTGACCATTGTGCTATTTCATTTACTGATCTTTATCGAAGCTGCCCCGAGTGTTCCTTTGAAATCTGCCTTAACTGTTGCAAAGAAATACGCAATGGAAGTATATCACCGCGGTGCAATATGAAGTTTCAATATGTGAATAGGGGGTATGATTATATGCATGGTGGTGATCCATTACCAGTGTGTAGTAATTTTGGGATTTTAAGAGGTCATTCTAAGATATTTAGCAAATGGGAGGCCAACAGTGATGGAAGTATTAGATGTGCACCAAAAGAAATGGGGGGCTGTGGTGGCCCTGTGATGGAGCTGAAGCGTATTTTTTCAAATGGGTGGATGTCAGACTTGGAAGCCAAAGCTCGTAACATGCTAAAAGGTTTTTCTAAAACTGAACAAACAGTTCTTCAGAAAGAAGCAATATCAGGTTGCAATTCTAAGATAAGAGCAGCTTTTAGAGATGGCACAAGTGATAATAACTTATACTGTCCATTGTCAAGTGACCTCATAAATGAAGGACTGCTTCTCTTCCAAAAACATTGGACTCAAGGGGAACCAATCCTAGTTCGTGATGTTCTTAAGCAGGGTACAGGTCTTAGTTGGGAGCCAATGGTCACATTGCGAGCCCTATGTGAAAACGCGGTTCCAGGAATCAGCTCAAATACTACTGAATTGAAGGCCATTGATTGCCTTTCTTGTTGTGAGGTAGAAATCAATACTCGTACATTCTTCAAGGGTTATACCCAAGGAAGAGCTTATGGAAATCTCTGGCCGGAGATGCTGAAGTTAAAAGACTGGCCTCCCTCTGACAAGTTTGATGATCTTTTGCCTCGCCATTGTGACGAGTTTATCCGCTGCTTGCCATTTAAAGAGTATTGTGATCCTCGATCTGGGATCCTCAACCTTGCTGTAAAGTTGCCATCTCATGTTCTAAAGCCAGACCTTGGTCCAAAAACATATATTGCTTATGGGATTAAAGAGGAACTTGGCAGGGGAGATTCTGTAACAAAACTTCACTGTGATGTGTCTGATGCTGTGAATATTTTGATCCACACGACTGAGGTAACATTGAGTGATGAACAAAATTCTGTTATTCCAAAACTGAAAAAAACACACATTGCCCAAGATGAGAAAGAGGGACGTGCTCGAGAAAGGGTCGATGGATGCCTGAATGAAGGACTTTGCAAAGACCACAGAGAAGAATATAAGAGTGCTGTTTCTAAAGAGTCAGGTGGTGCTCTTTGGGACATCTTTCGGAGAGAGGATACTGAAAAGTTAGAAGCATATCTAAGAAAGCACTCTAAAGAATTTAGGCATACTTATTGCTCTCGAGTTGAAGAGGTTGTCCATCCAATTCATGACCAATGTTTTTACCTGACTTTGGAACATAAGAAGAATCTGAAGAAGGAGTTTGGTGTAGAACCTTGGACTTTTGAGCAACAACTTGGGGAGGCAGTATTTATTCCTGCTGGATGTGCACACCAAGTCAGGAATCTTAAGTCATGCACAAAAGTTGCTGTAGATTTTGTGTCCCCAGAAAATGTTCATATGTGCCTGCATTTAACTGAAGAATTCCGTTGTCTTCCCAAGAATCACAAGGCCAGAGAAGATAAACTTGAGATGCAGAAAATGATAGTCTATGCTGTTGACAGTGCTGTCAAAGAATTAGAAGCTTTACGTTCTTGA 2001 0.4063 MYCLWCIKRWYPNLTVSDISHECPFCRNNCNCSVCLLSRGTIKTSNSKITDHERVQHLQYMINLLTPFIQHICEEQSQELEIEAKIQEKSSAEIEIPQTSCENERIYCDHCAISFTDLYRSCPECSFEICLNCCKEIRNGSISPRCNMKFQYVNRGYDYMHGGDPLPVCSNFGILRGHSKIFSKWEANSDGSIRCAPKEMGGCGGPVMELKRIFSNGWMSDLEAKARNMLKGFSKTEQTVLQKEAISGCNSKIRAAFRDGTSDNNLYCPLSSDLINEGLLLFQKHWTQGEPILVRDVLKQGTGLSWEPMVTLRALCENAVPGISSNTTELKAIDCLSCCEVEINTRTFFKGYTQGRAYGNLWPEMLKLKDWPPSDKFDDLLPRHCDEFIRCLPFKEYCDPRSGILNLAVKLPSHVLKPDLGPKTYIAYGIKEELGRGDSVTKLHCDVSDAVNILIHTTEVTLSDEQNSVIPKLKKTHIAQDEKEGRARERVDGCLNEGLCKDHREEYKSAVSKESGGALWDIFRREDTEKLEAYLRKHSKEFRHTYCSRVEEVVHPIHDQCFYLTLEHKKNLKKEFGVEPWTFEQQLGEAVFIPAGCAHQVRNLKSCTKVAVDFVSPENVHMCLHLTEEFRCLPKNHKAREDKLEMQKMIVYAVDSAVKELEALRS 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01135 666 FunFam Transcription factor jumonji domain-containing protein 263 640 - -
Vimu2g01135 666 ProSiteProfiles JmjC domain profile. 400 631 IPR003347 -
Vimu2g01135 666 SMART cupin_9 381 631 IPR003347 -
Vimu2g01135 666 SUPERFAMILY Clavaminate synthase-like 281 664 - -
Vimu2g01135 666 Gene3D Cupin 261 640 - -
Vimu2g01135 666 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 2 665 IPR045109 GO:0032454|GO:0033169
Vimu2g01135 666 Pfam JmjC domain, hydroxylase 516 614 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01135 Vimu-Chr2 7490874 7494214 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vimu2g01135 JmjC 4.6e-14 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01135 K15601 K21989 gmx:100801772 1095.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01135 2 7490874 7494214 Vimu2g01135 2 7490874 7494214 ECH
Vimu7g02032 7 18226541 18230511 Vimu2g01135 2 7490874 7494214 PCT