Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01126 ATGGCCACTTTAACCATTCTCCTAGTACTCTCAGCATGCTCTCTACCCACCTTAGCTTCAACAGTGAATAACAGAGATTCAACAAAGGAATTCGATGCCCTCTCTCCCATTCCAAGCTATATCACCCAGAGTAGCCCTAAGAATGTTGTGATGAACACAATAGATTCATGTTGGCGAGCCAAAACAAATTGGGCTTCTAATCGCCAATCCTTGGCGGATTGTGCAATTGGCTTTGGCAAAGATGCCATAGGAGGAAAGTTTGGTGATGTATATGAAGTCACTGATCCTTCTGATGACCCTGTAGACCCAAAACCTGGCACACTTCGTTATGGTGCAATCCAAACAGAACCCCTTTGGATAACTTTCGCCGAGGACATGGTCATCTCGCTGAAGAATGAGCTCATGGTGAATAGCTACAAAAGCATTGATGGGAGAGGAGCTAAAGTGGAGATTGCAAACGGGGCTTGCATTACGATACAAGGTGTTAGCCATGTAATCATACATGGAATTAGCATTCATGATTGTAAGCCTGGTGATGGTGGCATGGTTAGGAGCAGTCCTGAGCATGTTGGGTATCGTGAAGGCTCTGATGGAGATGCCATCAGCATATTTGCCTCCTCCAATGTGTGGATTGACCATTGCTTTTTGGCTCGTTGCACCGATGGTCTCATTGATGTTATTCATGCCTCAACTGCAGTCACCATCTCTAACAATTACTTCACCCACCACGACAAAGTGATGCTGCTAGGGCACAGCGATGAATACAGCGCGGATAAAGTAATGAAAGTAACAGTAGCTTTTAACCACTTTGCCAGTGACTTAATAGAAAGAATGCCAAGGGTGAGATTTGGTTATGCTCATGTGGTGAACAACCGGTATGACGAGTGGCTGATGTATGCCATTGGTGGCAGTGCCGACCCTACCATTTTCAGTGAAGGCAACTATTTTACGGCTTCAGATGATTCTTCTGCAAAACAGGTTACGAAGAGGGAAAGTAGTGAAAAGTGGAAGAATTGGAAATGGAGGAGTTATGGAGATGAATTCTTAAATGGTGCTTATTTTGTGCCGTCTGGGTATGGAAGTTGCAGCCCATTGTATTCATCTGCTCAAACTTTCACAGCCACGCAGGCTTCCATGGTGCCCTTGTTAACTCTCAATGCAGGGCCACTCAACTGTGTTCTTCACAAACCTTGTTAA 1197 0.4495 MATLTILLVLSACSLPTLASTVNNRDSTKEFDALSPIPSYITQSSPKNVVMNTIDSCWRAKTNWASNRQSLADCAIGFGKDAIGGKFGDVYEVTDPSDDPVDPKPGTLRYGAIQTEPLWITFAEDMVISLKNELMVNSYKSIDGRGAKVEIANGACITIQGVSHVIIHGISIHDCKPGDGGMVRSSPEHVGYREGSDGDAISIFASSNVWIDHCFLARCTDGLIDVIHASTAVTISNNYFTHHDKVMLLGHSDEYSADKVMKVTVAFNHFASDLIERMPRVRFGYAHVVNNRYDEWLMYAIGGSADPTIFSEGNYFTASDDSSAKQVTKRESSEKWKNWKWRSYGDEFLNGAYFVPSGYGSCSPLYSSAQTFTATQASMVPLLTLNAGPLNCVLHKPC 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01126 398 SMART amb_all 125 322 IPR002022 -
Vimu2g01126 398 Pfam Pectate lyase 131 316 IPR002022 -
Vimu2g01126 398 SUPERFAMILY Pectin lyase-like 51 389 IPR011050 -
Vimu2g01126 398 Gene3D - 51 391 IPR012334 -
Vimu2g01126 398 PANTHER PECTATE LYASE 18-RELATED 42 394 IPR045032 GO:0030570
Vimu2g01126 398 PRINTS Pollen allergen Amb family signature 133 149 IPR018082 -
Vimu2g01126 398 PRINTS Pollen allergen Amb family signature 369 392 IPR018082 -
Vimu2g01126 398 PRINTS Pollen allergen Amb family signature 74 91 IPR018082 -
Vimu2g01126 398 PRINTS Pollen allergen Amb family signature 197 218 IPR018082 -
Vimu2g01126 398 PRINTS Pollen allergen Amb family signature 339 363 IPR018082 -
Vimu2g01126 398 PRINTS Pollen allergen Amb family signature 277 296 IPR018082 -
Vimu2g01126 398 PRINTS Pollen allergen Amb family signature 97 122 IPR018082 -
Vimu2g01126 398 PRINTS Pollen allergen Amb family signature 299 318 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01126 Vimu-Chr2 7446184 7447742 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01126 6 398 Polysaccharide Lyase AT4G22080 65.649 0.0 542
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01126 K01728 - gmx:100803229 711.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02034 7 18234764 18236223 Vimu2g01126 2 7446184 7447742 PCT