Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01124 ATGGCTACCTCTTCTATACTCCTCTTGCTTTCATGCTTCATACTAAACCTTGCATGTTTATCACAAACTGCAGTCCTGAACATGATAGACTCATGCAGGCTTGCCAAATCCAATTGGGCATCAAATCGCCAAGCCTTGGCTGATTGTGCCATTGGCTTTGGAAGTGATACGATTGGAGGCAAATATGGAGCAATATATCAAGTCACAGATCCCTCTGATGATCCCATAAAACCAAAAGCAGGCACACTTCGTCATGCCGTGTTCAATCCGATTCAAATCGAAAAGAAAAGAGAAGAAAAAATGGTGTCGTCCCAAGTTGTGAATACATACCCGTTGTCGAGCTACACTTTTGGCACAAAGGAGCCCAAGATGGAGAAGGACACCTCCGTCGCCGATCGTCTCGCTCGCATGAAAGTCAACTATATGAAGGAGGGAATGAGGACCAGTGTAGAAGGGATTTTACTGGTTCAAGAACATAATCATCCACATATACTTCTTCTGCAAATTGGAAACACGTTTTGCAAACTCCCGGGTGGTCGTCTCAAACCAGGAGAGAATGAAATTGAGGGCTTGAAGAGAAAGTTGACTAGCAAGCTTGGTGCTAATTCACCAGCTCTTGTGCCTGACTGGCAGATAGGTGAGTGTGTTGCAATCTGGTGGAGGCCAAATTTTGAAACCATAATGTATCCATACTGCCCTCCTCATATCACAAAACCCAAGGAGTGCAAAAAACTTTTCCTTGTTCACTTATCTGAAAGGGAATACTTTGCAGTGCCAAAAAATTTAAAACTACTTGCTGTGCCATTGTTTGAACTCTATGACAATGTTCAGAGATACGGTCCAGTTATATCCACCATTCCTCAGCAGCTATCCAGATTCCAGTTTAAAATGATCACTAATTGA 903 0.4297 MATSSILLLLSCFILNLACLSQTAVLNMIDSCRLAKSNWASNRQALADCAIGFGSDTIGGKYGAIYQVTDPSDDPIKPKAGTLRHAVFNPIQIEKKREEKMVSSQVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEGILLVQEHNHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWWRPNFETIMYPYCPPHITKPKECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFKMITN 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01124 300 PANTHER PRE-MRNA CLEAVAGE FACTOR IM, 25KD SUBUNIT 103 299 IPR016706 GO:0003729|GO:0005849|GO:0006378
Vimu2g01124 300 PRINTS Pollen allergen Amb family signature 49 66 IPR018082 -
Vimu2g01124 300 PRINTS Pollen allergen Amb family signature 72 97 IPR018082 -
Vimu2g01124 300 Gene3D - 26 99 IPR012334 -
Vimu2g01124 300 ProSiteProfiles Nudix hydrolase domain profile. 146 271 IPR000086 -
Vimu2g01124 300 SUPERFAMILY Nudix 153 252 IPR015797 -
Vimu2g01124 300 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 105 297 - -
Vimu2g01124 300 Pfam Nucleotide hydrolase 106 293 IPR016706 GO:0003729|GO:0005849|GO:0006378
Vimu2g01124 300 FunFam Pre-mRNA cleavage factor Im subunit 2 105 297 - -
Vimu2g01124 300 SUPERFAMILY Pectin lyase-like 27 87 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01124 Vimu-Chr2 7438478 7442418 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01124 27 110 Polysaccharide Lyase AT1G11920 52.273 2.58e-21 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01124 K14397 - gmx:100790200 412.535